PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82201-82250 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D6_15 | * | het | 92.5374 | 97.5155 | 88.0429 | 52.4636 | 11304 | 288 | 19299 | 2621 | 996 | 38.0008 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | het | 96.1913 | 95.9023 | 96.4821 | 82.5326 | 19308 | 825 | 19308 | 704 | 206 | 29.2614 | |
| gduggal-snapplat | SNP | ti | segdup | * | 99.0792 | 98.8483 | 99.3111 | 92.8755 | 19312 | 225 | 19317 | 134 | 17 | 12.6866 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.9555 | 98.7078 | 99.2044 | 76.2044 | 19326 | 253 | 19326 | 155 | 19 | 12.2581 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.9555 | 98.7078 | 99.2044 | 76.2044 | 19326 | 253 | 19326 | 155 | 19 | 12.2581 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | * | 98.9175 | 98.0418 | 99.8089 | 66.8010 | 19326 | 386 | 19329 | 37 | 16 | 43.2432 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 51.2406 | 42.6785 | 64.1003 | 68.1692 | 16176 | 21726 | 19332 | 10827 | 4241 | 39.1706 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | * | 82.8010 | 79.0049 | 86.9802 | 71.6783 | 19357 | 5144 | 19347 | 2896 | 701 | 24.2058 | |
| ckim-isaac | SNP | * | map_l100_m0_e0 | * | 74.0949 | 58.9233 | 99.7886 | 67.9602 | 19351 | 13490 | 19354 | 41 | 9 | 21.9512 | |
| anovak-vg | INDEL | I1_5 | HG002complexvar | * | 58.0984 | 57.1891 | 59.0370 | 52.0780 | 19080 | 14283 | 19360 | 13433 | 12541 | 93.3596 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | * | 99.0365 | 98.2955 | 99.7888 | 72.3511 | 19376 | 336 | 19376 | 41 | 23 | 56.0976 | |
| jmaeng-gatk | SNP | ti | segdup | * | 98.6795 | 99.2681 | 98.0979 | 93.0686 | 19394 | 143 | 19392 | 376 | 6 | 1.5957 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8431 | 99.0551 | 98.6319 | 76.1009 | 19394 | 185 | 19394 | 269 | 19 | 7.0632 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8431 | 99.0551 | 98.6319 | 76.1009 | 19394 | 185 | 19394 | 269 | 19 | 7.0632 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | * | 97.8236 | 98.3918 | 97.2619 | 78.7439 | 19395 | 317 | 19395 | 546 | 133 | 24.3590 | |
| jpowers-varprowl | SNP | ti | segdup | * | 98.3696 | 99.2783 | 97.4774 | 91.2225 | 19396 | 141 | 19398 | 502 | 38 | 7.5697 | |
| ckim-gatk | SNP | ti | segdup | * | 98.9344 | 99.3295 | 98.5425 | 92.9771 | 19406 | 131 | 19404 | 287 | 8 | 2.7875 | |
| ckim-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.6574 | 71.9327 | 99.9485 | 66.2938 | 19424 | 7579 | 19424 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | het | 97.8706 | 99.5778 | 96.2209 | 80.3517 | 20048 | 85 | 19427 | 763 | 22 | 2.8834 | |
| ckim-vqsr | SNP | * | map_l125_m1_e0 | het | 80.8165 | 68.4629 | 98.6098 | 88.4760 | 19438 | 8954 | 19435 | 274 | 3 | 1.0949 | |
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.6054 | 97.3613 | 99.8818 | 50.3445 | 19666 | 533 | 19436 | 23 | 17 | 73.9130 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | * | 98.7276 | 98.5998 | 98.8556 | 76.3349 | 19436 | 276 | 19436 | 225 | 69 | 30.6667 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | * | 96.1043 | 98.6353 | 93.7000 | 82.0564 | 19443 | 269 | 19439 | 1307 | 125 | 9.5639 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | het | 98.1544 | 96.5480 | 99.8151 | 61.4966 | 19438 | 695 | 19439 | 36 | 2 | 5.5556 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.9363 | 99.2849 | 98.5900 | 75.9853 | 19439 | 140 | 19439 | 278 | 23 | 8.2734 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.9363 | 99.2849 | 98.5900 | 75.9853 | 19439 | 140 | 19439 | 278 | 23 | 8.2734 | |
| gduggal-bwafb | SNP | ti | segdup | * | 99.0195 | 99.5086 | 98.5352 | 91.2837 | 19441 | 96 | 19441 | 289 | 16 | 5.5363 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2940 | 99.3207 | 97.2884 | 75.8975 | 19446 | 133 | 19446 | 542 | 30 | 5.5351 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2940 | 99.3207 | 97.2884 | 75.8975 | 19446 | 133 | 19446 | 542 | 30 | 5.5351 | |
| gduggal-snapfb | SNP | ti | segdup | * | 99.1459 | 99.5137 | 98.7809 | 90.9477 | 19442 | 95 | 19446 | 240 | 23 | 9.5833 | |
| cchapple-custom | INDEL | I6_15 | * | het | 98.6365 | 97.9268 | 99.3566 | 49.5505 | 9825 | 208 | 19457 | 126 | 91 | 72.2222 | |
| ndellapenna-hhga | SNP | ti | segdup | * | 99.5651 | 99.6059 | 99.5244 | 88.6856 | 19460 | 77 | 19460 | 93 | 33 | 35.4839 | |
| ltrigg-rtg1 | SNP | ti | segdup | * | 99.1266 | 99.6417 | 98.6169 | 87.5468 | 19467 | 70 | 19465 | 273 | 31 | 11.3553 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.2708 | 99.4280 | 99.1141 | 69.5332 | 19467 | 112 | 19467 | 174 | 16 | 9.1954 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.2708 | 99.4280 | 99.1141 | 69.5332 | 19467 | 112 | 19467 | 174 | 16 | 9.1954 | |
| ltrigg-rtg2 | SNP | ti | segdup | * | 99.2028 | 99.6980 | 98.7126 | 86.7471 | 19478 | 59 | 19475 | 254 | 32 | 12.5984 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | het | 89.6801 | 96.8079 | 83.5299 | 85.0251 | 19713 | 650 | 19475 | 3840 | 262 | 6.8229 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0767 | 99.4790 | 98.6777 | 68.4621 | 19477 | 102 | 19477 | 261 | 12 | 4.5977 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0767 | 99.4790 | 98.6777 | 68.4621 | 19477 | 102 | 19477 | 261 | 12 | 4.5977 | |
| ghariani-varprowl | SNP | ti | segdup | * | 98.2251 | 99.6929 | 96.7998 | 91.5895 | 19477 | 60 | 19480 | 644 | 38 | 5.9006 | |
| egarrison-hhga | SNP | ti | segdup | * | 99.6343 | 99.7134 | 99.5554 | 88.9440 | 19481 | 56 | 19481 | 87 | 25 | 28.7356 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.8037 | 72.1438 | 99.9590 | 65.3578 | 19481 | 7522 | 19481 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.5554 | 99.5199 | 99.5910 | 69.5435 | 19485 | 94 | 19481 | 80 | 32 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.5554 | 99.5199 | 99.5910 | 69.5435 | 19485 | 94 | 19481 | 80 | 32 | 40.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.8200 | 97.9622 | 99.6930 | 47.9840 | 1346 | 28 | 19485 | 60 | 60 | 100.0000 | |
| jli-custom | SNP | ti | map_l150_m1_e0 | * | 99.2008 | 98.8636 | 99.5403 | 71.1664 | 19488 | 224 | 19486 | 90 | 35 | 38.8889 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | * | 99.1152 | 98.8890 | 99.3424 | 73.3921 | 19493 | 219 | 19489 | 129 | 91 | 70.5426 | |
| cchapple-custom | SNP | ti | segdup | * | 99.6040 | 99.8311 | 99.3779 | 91.2552 | 19504 | 33 | 19490 | 122 | 16 | 13.1148 | |