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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
81801-81850 / 86044 show all
ltrigg-rtg1SNPtimap_l125_m1_e0het
98.7165
97.6842
99.7708
60.2794
1784342317844417
17.0732
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
ckim-vqsrSNP*map_l100_m0_e0*
70.1414
54.3558
98.8482
87.4638
1785114990178502082
0.9615
ckim-dragenSNPtimap_l100_m1_e0homalt
99.6288
99.3708
99.8881
54.6776
17847113178522019
95.0000
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.7569
99.8600
99.6542
57.5039
1782625178656215
24.1935
cchapple-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4978
99.5967
99.3992
57.0007
17779721786710827
25.0000
asubramanian-gatkINDELI1_5HG002complexvarhet
99.1051
98.3342
99.8882
58.4164
17886303178682013
65.0000
gduggal-snapfbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.6868
98.6611
72.6589
66.9839
17612239178696724214
3.1826
egarrison-hhgaINDELI1_5HG002complexvarhet
98.9830
98.5431
99.4269
55.1160
179242651786910326
25.2427
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.3869
97.8750
98.9043
46.8420
1787138817872198194
97.9798
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8622
99.1709
98.5554
65.0606
177031481787426243
16.4122
dgrover-gatkSNPtimap_l100_m1_e0homalt
99.7294
99.5323
99.9273
57.4153
1787684178761311
84.6154
rpoplin-dv42SNPtimap_l100_m1_e0homalt
99.6655
99.5323
99.7990
60.4404
1787684178773634
94.4444
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.4584
55.1138
57.8702
55.3114
1763214360178791301610534
80.9312
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4121
97.9243
98.9048
46.8296
1788037917881198194
97.9798
gduggal-bwavardSNP*func_cds*
99.3111
98.9862
99.6380
30.1556
17966184178926523
35.3846
ndellapenna-hhgaSNPtimap_l125_m1_e0het
98.8592
97.9689
99.7658
69.2090
17895371178954220
47.6190
gduggal-snapvardSNP*func_cds*
99.3360
99.0138
99.6603
29.3432
17971179178956123
37.7049
jli-customSNPtimap_l100_m1_e0homalt
99.7965
99.6548
99.9386
56.4067
1789862178981111
100.0000
bgallagher-sentieonSNPtimap_l100_m1_e0homalt
99.7937
99.6659
99.9218
56.9365
1790060179001412
85.7143
ndellapenna-hhgaSNPtimap_l100_m1_e0homalt
99.7965
99.6659
99.9274
59.1233
1790060179001313
100.0000
ltrigg-rtg2SNPtimap_l100_m1_e0homalt
99.8049
99.6715
99.9386
57.1476
1790159179001111
100.0000
raldana-dualsentieonSNPtimap_l100_m1_e0homalt
99.8161
99.7049
99.9275
56.2318
1790753179071312
92.3077
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
87.8316
82.7461
93.5831
40.4184
1209525221790912281155
94.0554
ltrigg-rtg1SNPtimap_l100_m1_e0homalt
99.8050
99.7216
99.8885
59.4316
1791050179102020
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4990
98.1160
98.8851
46.7540
1791534417916202197
97.5248
egarrison-hhgaSNPtimap_l100_m1_e0homalt
99.8579
99.7829
99.9331
60.2302
1792139179211212
100.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8703
98.0010
99.7551
37.4155
17894365179244441
93.1818
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.5379
98.1817
98.8967
47.5296
1792733217928200196
98.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.7473
94.3151
97.2237
42.8173
17221103817930512480
93.7500
hfeng-pmm1SNPtimap_l100_m1_e0homalt
99.8580
99.8385
99.8775
60.1505
1793129179312212
54.5455
hfeng-pmm3SNPtimap_l100_m1_e0homalt
99.8636
99.8497
99.8775
60.0521
1793327179332212
54.5455
anovak-vgSNP*map_l150_m2_e0het
75.9821
90.0512
65.7151
81.6508
1813020031793393562121
22.6699
hfeng-pmm2SNPtimap_l100_m1_e0homalt
99.8719
99.8775
99.8664
60.1447
1793822179382414
58.3333
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333
eyeh-varpipeSNP*func_cds*
98.2084
99.9669
96.5106
26.4105
181446179506491
0.1541
gduggal-snapplatSNPtimap_l125_m2_e1het
94.1854
93.9645
94.4074
84.4472
179351152179611064575
54.0414
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8579
98.3570
99.3639
41.8770
1795930017963115109
94.7826
raldana-dualsentieonINDELI1_5HG002complexvarhet
99.3867
98.9004
99.8777
56.7573
17989200179702213
59.0909
gduggal-snapfbSNPtimap_l100_m2_e1homalt
98.4714
97.1829
99.7946
68.9893
17973521179743721
56.7568
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
55.6919
47.1555
68.0020
66.7689
15086169061797784593479
41.1278
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.4506
98.8726
98.0323
41.8823
17978205179853614
1.1080
eyeh-varpipeSNPtimap_l100_m2_e1homalt
99.8795
99.8756
99.8834
64.4482
1847123179862112
57.1429
ciseli-customSNP*func_cds*
97.9137
99.4601
96.4146
25.6110
18052981799066942
6.2780
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.8405
91.9659
97.9006
68.3752
1800615731800038615
3.8860
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.8405
91.9659
97.9006
68.3752
1800615731800038615
3.8860
ndellapenna-hhgaINDEL*HG002compoundhethetalt
85.1313
74.5631
99.1899
56.3007
18775640518000147122
82.9932
hfeng-pmm2INDELI1_5HG002complexvarhet
99.4756
99.0819
99.8724
57.6818
18022167180022311
47.8261
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2994
98.9826
99.6182
37.5156
17998185180046946
66.6667