PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
81651-81700 / 86044 show all
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
58.9492
55.4636
62.9024
64.8301
174201398817390102569749
95.0566
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
58.9492
55.4636
62.9024
64.8301
174201398817390102569749
95.0566
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3259
98.9526
99.7019
63.0961
17384184173915220
38.4615
asubramanian-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9673
98.9982
98.9364
66.6862
173921761739518718
9.6257
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
rpoplin-dv42SNP*map_l125_m2_e1homalt
99.5110
99.2471
99.7764
69.2363
17400132174003938
97.4359
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6682
96.2747
75.5590
61.4479
17186665174025629124
2.2029
rpoplin-dv42SNPtiHG002compoundhet*
99.6565
99.5938
99.7193
35.2092
1740771174054942
85.7143
gduggal-bwaplatSNPtvmap_l100_m2_e1*
81.3480
68.8368
99.4174
84.4949
1740478791740510220
19.6078
cchapple-customSNPtiHG002compoundhet*
99.2669
98.9816
99.5539
35.4095
17300178174067864
82.0513
gduggal-snapvardSNPtimap_l100_m2_e0homalt
97.9436
96.1822
99.7707
62.4459
17610699174084033
82.5000
ckim-isaacSNP*map_l150_m2_e0*
70.6023
54.6496
99.7079
77.9961
1740714445174085112
23.5294
dgrover-gatkSNP*map_l125_m2_e1homalt
99.6110
99.3269
99.8967
66.5258
17414118174141813
72.2222
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.6374
95.8769
95.3990
63.4546
1741774917417840435
51.7857
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.6374
95.8769
95.3990
63.4546
1741774917417840435
51.7857
ckim-dragenSNP*map_l125_m2_e1homalt
99.5683
99.3212
99.8166
63.9224
17413119174183229
90.6250
eyeh-varpipeSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.1915
99.5930
94.9031
45.9580
18109741742893671
7.5855
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4577
99.1576
99.7596
63.2532
17420148174304221
50.0000
jlack-gatkSNPtiHG002compoundhet*
99.6570
99.7425
99.5716
36.7466
1743345174317522
29.3333
gduggal-snapfbSNPtimap_l100_m1_e0homalt
98.4338
97.1102
99.7940
67.2966
17441519174423620
55.5556
bgallagher-sentieonSNPtiHG002compoundhet*
99.8512
99.8226
99.8798
35.5355
1744731174452114
66.6667
jli-customSNPtiHG002compoundhet*
99.7826
99.8112
99.7541
35.5495
1744533174454322
51.1628
dgrover-gatkSNPtiHG002compoundhet*
99.8369
99.8284
99.8455
35.6925
1744830174462721
77.7778
ndellapenna-hhgaSNP*map_l125_m2_e1homalt
99.7429
99.5665
99.9199
68.0072
1745676174561413
92.8571
ckim-dragenSNPtiHG002compoundhet*
99.7941
99.8055
99.7828
35.8899
1744434174573818
47.3684
bgallagher-sentieonSNP*map_l125_m2_e1homalt
99.7315
99.5779
99.8856
66.0476
1745874174582015
75.0000
jli-customSNP*map_l125_m2_e1homalt
99.7486
99.5779
99.9199
65.4177
1745874174581413
92.8571
eyeh-varpipeSNPtimap_l100_m1_e0homalt
99.8788
99.8719
99.8856
62.1452
1793723174642012
60.0000
ltrigg-rtg2SNP*map_l125_m2_e1homalt
99.7600
99.5779
99.9428
65.9933
174587417465109
90.0000
astatham-gatkSNPtimap_l150_m2_e1*
91.3679
84.3025
99.7259
80.0126
174703253174664827
56.2500
raldana-dualsentieonSNP*map_l125_m2_e1homalt
99.7744
99.6350
99.9142
65.3032
1746864174681511
73.3333
mlin-fermikitSNPtimap_l100_m2_e0het
72.2999
57.0570
98.6561
56.4180
1747213150174722389
3.7815
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.8647
96.7839
94.9628
65.9014
1700356517476927381
41.1003
anovak-vgSNPtimap_l150_m2_e0*
79.7989
85.9302
74.4843
79.9053
1762628861747759871363
22.7660
ltrigg-rtg1SNP*map_l125_m2_e1homalt
99.7859
99.6635
99.9086
68.1960
1747359174801616
100.0000
egarrison-hhgaSNP*map_l125_m2_e1homalt
99.8144
99.7034
99.9257
69.0000
1748052174801313
100.0000
ckim-vqsrSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2929
99.5560
99.0312
67.2462
17490781748017115
8.7719
cchapple-customSNPtimap_l100_m1_e0homalt
98.6915
97.4276
99.9886
54.9898
174984621749322
100.0000
hfeng-pmm3SNP*map_l125_m2_e1homalt
99.8003
99.7775
99.8231
68.9786
1749339174933113
41.9355
hfeng-pmm1SNP*map_l125_m2_e1homalt
99.8117
99.7947
99.8288
69.0610
1749636174963012
40.0000
qzeng-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.5348
99.3169
97.7649
70.3556
174481201749640017
4.2500
hfeng-pmm2SNP*map_l125_m2_e1homalt
99.8146
99.8175
99.8118
69.0869
1750032175003314
42.4242
gduggal-snapvardSNPtimap_l125_m1_e0het
91.5438
96.5345
87.0437
81.1544
17633633175012605206
7.9079
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4801
99.6983
99.2628
67.4240
17515531750513011
8.4615
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4459
99.5389
99.3531
60.6036
1748781175081149
7.8947
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3248
99.5674
99.0833
60.5130
17492761751016212
7.4074
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2041
99.7097
98.7036
65.3598
17517511751223014
6.0870
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4079
99.8008
97.0534
66.9969
17533351752353219
3.5714
gduggal-bwafbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4793
99.5219
97.4583
69.5878
17484841752345779
17.2867