PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81551-81600 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8953 | 99.9243 | 99.8662 | 56.6428 | 17164 | 13 | 17169 | 23 | 7 | 30.4348 | |
| ckim-dragen | SNP | tv | map_siren | homalt | 99.7415 | 99.5824 | 99.9011 | 51.8437 | 17168 | 72 | 17170 | 17 | 15 | 88.2353 | |
| dgrover-gatk | SNP | tv | map_siren | homalt | 99.7938 | 99.6520 | 99.9360 | 53.0780 | 17180 | 60 | 17177 | 11 | 9 | 81.8182 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5920 | 97.2554 | 97.9309 | 57.6692 | 17186 | 485 | 17181 | 363 | 345 | 95.0413 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5920 | 97.2554 | 97.9309 | 57.6692 | 17186 | 485 | 17181 | 363 | 345 | 95.0413 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | * | 81.2147 | 68.6414 | 99.4272 | 84.5184 | 17183 | 7850 | 17184 | 99 | 19 | 19.1919 | |
| jli-custom | SNP | tv | map_siren | homalt | 99.8403 | 99.7332 | 99.9477 | 52.3546 | 17194 | 46 | 17191 | 9 | 9 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6405 | 97.3120 | 97.9712 | 57.8582 | 17196 | 475 | 17191 | 356 | 338 | 94.9438 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6405 | 97.3120 | 97.9712 | 57.8582 | 17196 | 475 | 17191 | 356 | 338 | 94.9438 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | het | 75.5953 | 89.9876 | 65.1719 | 80.5681 | 17382 | 1934 | 17193 | 9188 | 2064 | 22.4641 | |
| ndellapenna-hhga | SNP | tv | map_siren | homalt | 99.8287 | 99.7274 | 99.9303 | 55.1755 | 17193 | 47 | 17193 | 12 | 10 | 83.3333 | |
| ltrigg-rtg2 | SNP | tv | map_siren | homalt | 99.8781 | 99.7912 | 99.9651 | 52.8102 | 17204 | 36 | 17198 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0590 | 97.3516 | 98.7767 | 53.3290 | 17203 | 468 | 17199 | 213 | 200 | 93.8967 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0590 | 97.3516 | 98.7767 | 53.3290 | 17203 | 468 | 17199 | 213 | 200 | 93.8967 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |
| bgallagher-sentieon | SNP | tv | map_siren | homalt | 99.8607 | 99.7854 | 99.9361 | 52.7521 | 17203 | 37 | 17200 | 11 | 9 | 81.8182 | |
| egarrison-hhga | SNP | tv | map_siren | homalt | 99.8636 | 99.7854 | 99.9419 | 55.8765 | 17203 | 37 | 17203 | 10 | 9 | 90.0000 | |
| ltrigg-rtg1 | SNP | tv | map_siren | homalt | 99.8926 | 99.8318 | 99.9535 | 54.5447 | 17211 | 29 | 17205 | 8 | 5 | 62.5000 | |
| raldana-dualsentieon | SNP | tv | map_siren | homalt | 99.9013 | 99.8318 | 99.9710 | 52.2802 | 17211 | 29 | 17208 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | * | segdup | het | 97.9514 | 99.4283 | 96.5177 | 95.0045 | 17218 | 99 | 17212 | 621 | 2 | 0.3221 | |
| astatham-gatk | SNP | * | map_l125_m2_e0 | homalt | 99.4712 | 99.0619 | 99.8839 | 66.1554 | 17212 | 163 | 17212 | 20 | 16 | 80.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | * | 69.5020 | 53.4244 | 99.4224 | 91.0196 | 17208 | 15002 | 17212 | 100 | 30 | 30.0000 | |
| ndellapenna-hhga | SNP | * | segdup | het | 99.4196 | 99.4052 | 99.4339 | 89.3885 | 17214 | 103 | 17214 | 98 | 4 | 4.0816 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2947 | 98.8383 | 97.7570 | 71.4388 | 17612 | 207 | 17215 | 395 | 354 | 89.6203 | |
| gduggal-snapfb | SNP | * | segdup | het | 98.5769 | 99.3590 | 97.8069 | 92.1233 | 17206 | 111 | 17215 | 386 | 16 | 4.1451 | |
| hfeng-pmm3 | SNP | tv | map_siren | homalt | 99.8898 | 99.8724 | 99.9071 | 55.8869 | 17218 | 22 | 17215 | 16 | 8 | 50.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8987 | 98.8832 | 98.9142 | 71.1221 | 17620 | 199 | 17218 | 189 | 154 | 81.4815 | |
| hfeng-pmm1 | SNP | tv | map_siren | homalt | 99.8956 | 99.8898 | 99.9014 | 56.0205 | 17221 | 19 | 17219 | 17 | 8 | 47.0588 | |
| hfeng-pmm2 | SNP | tv | map_siren | homalt | 99.9014 | 99.9014 | 99.9014 | 56.1199 | 17223 | 17 | 17220 | 17 | 9 | 52.9412 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | homalt | 99.4945 | 99.1137 | 99.8782 | 70.3251 | 17221 | 154 | 17221 | 21 | 13 | 61.9048 | |
| ltrigg-rtg1 | SNP | * | segdup | het | 98.6738 | 99.4225 | 97.9363 | 87.6799 | 17217 | 100 | 17227 | 363 | 1 | 0.2755 | |
| ckim-gatk | SNP | * | segdup | het | 98.5246 | 99.5207 | 97.5483 | 94.9213 | 17234 | 83 | 17228 | 433 | 5 | 1.1547 | |
| egarrison-hhga | SNP | ti | HG002compoundhet | * | 99.0004 | 98.5925 | 99.4116 | 34.5800 | 17232 | 246 | 17233 | 102 | 75 | 73.5294 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2925 | 98.9506 | 97.6432 | 71.0801 | 17632 | 187 | 17235 | 416 | 367 | 88.2212 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1835 | 98.9169 | 97.4610 | 70.8771 | 17626 | 193 | 17235 | 449 | 399 | 88.8641 | |
| egarrison-hhga | SNP | * | segdup | het | 99.4921 | 99.5438 | 99.4404 | 89.6178 | 17238 | 79 | 17238 | 97 | 4 | 4.1237 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3320 | 98.9618 | 97.7101 | 71.4422 | 17634 | 185 | 17239 | 404 | 355 | 87.8713 | |
| ltrigg-rtg2 | SNP | * | segdup | het | 98.7596 | 99.4918 | 98.0380 | 86.6405 | 17229 | 88 | 17239 | 345 | 3 | 0.8696 | |
| ghariani-varprowl | SNP | * | segdup | het | 96.9575 | 99.5207 | 94.5230 | 93.2841 | 17234 | 83 | 17241 | 999 | 5 | 0.5005 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | homalt | 99.5066 | 99.2403 | 99.7743 | 69.1861 | 17243 | 132 | 17243 | 39 | 38 | 97.4359 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3348 | 98.9955 | 97.6830 | 71.3901 | 17640 | 179 | 17243 | 409 | 359 | 87.7751 | |
| astatham-gatk | SNP | ti | HG002compoundhet | * | 99.2746 | 98.6669 | 99.8899 | 35.7263 | 17245 | 233 | 17243 | 19 | 18 | 94.7368 | |
| rpoplin-dv42 | SNP | * | segdup | het | 99.7082 | 99.6651 | 99.7514 | 90.3344 | 17259 | 58 | 17253 | 43 | 3 | 6.9767 | |
| ltrigg-rtg2 | SNP | ti | HG002compoundhet | * | 99.3879 | 98.9873 | 99.7918 | 33.3089 | 17301 | 177 | 17255 | 36 | 13 | 36.1111 | |
| gduggal-bwavard | SNP | ti | map_l100_m1_e0 | homalt | 98.5262 | 97.1882 | 99.9016 | 59.9578 | 17455 | 505 | 17256 | 17 | 13 | 76.4706 | |
| dgrover-gatk | SNP | * | map_l125_m2_e0 | homalt | 99.6075 | 99.3209 | 99.8958 | 66.5083 | 17257 | 118 | 17257 | 18 | 13 | 72.2222 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002complexvar | het | 99.2372 | 98.7905 | 99.6881 | 51.9353 | 17969 | 220 | 17257 | 54 | 28 | 51.8519 | |
| hfeng-pmm1 | SNP | * | segdup | het | 99.6248 | 99.6939 | 99.5558 | 89.5848 | 17264 | 53 | 17258 | 77 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.9194 | 98.3001 | 97.5417 | 56.1712 | 16885 | 292 | 17260 | 435 | 173 | 39.7701 | |
| ckim-dragen | SNP | * | map_l125_m2_e0 | homalt | 99.5644 | 99.3151 | 99.8150 | 63.8939 | 17256 | 119 | 17261 | 32 | 29 | 90.6250 | |