PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80801-80850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0937 | 98.6068 | 97.5858 | 73.2956 | 14368 | 203 | 14552 | 360 | 14 | 3.8889 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0893 | 98.5240 | 97.6583 | 55.6495 | 14552 | 218 | 14555 | 349 | 337 | 96.5616 | |
| anovak-vg | SNP | tv | map_l125_m2_e1 | * | 80.9704 | 87.5908 | 75.2805 | 76.3445 | 14590 | 2067 | 14560 | 4781 | 1080 | 22.5894 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 60.5216 | 54.3406 | 68.2890 | 64.1858 | 11192 | 9404 | 14564 | 6763 | 3696 | 54.6503 | |
| anovak-vg | SNP | tv | map_l100_m2_e0 | het | 80.0810 | 92.3877 | 70.6676 | 74.1753 | 14576 | 1201 | 14566 | 6046 | 1273 | 21.0552 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | homalt | 88.0175 | 86.4537 | 89.6388 | 65.9316 | 14615 | 2290 | 14569 | 1684 | 1350 | 80.1663 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 67.7028 | 91.6754 | 53.6688 | 45.2639 | 10528 | 956 | 14570 | 12578 | 12360 | 98.2668 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | het | 94.6299 | 94.5320 | 94.7279 | 81.7875 | 14574 | 843 | 14572 | 811 | 394 | 48.5820 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5582 | 99.2146 | 99.9041 | 50.2607 | 14654 | 116 | 14581 | 14 | 6 | 42.8571 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | * | 93.2502 | 91.0465 | 95.5633 | 81.8317 | 14582 | 1434 | 14582 | 677 | 351 | 51.8464 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| jpowers-varprowl | INDEL | D6_15 | * | * | 59.8326 | 55.9329 | 64.3169 | 53.9833 | 14594 | 11498 | 14589 | 8094 | 8006 | 98.9128 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.8972 | 93.9872 | 99.9932 | 58.6098 | 14490 | 927 | 14606 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3977 | 98.8829 | 99.9179 | 55.5579 | 14605 | 165 | 14609 | 12 | 3 | 25.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6874 | 96.9552 | 98.4307 | 49.3864 | 5668 | 178 | 14614 | 233 | 211 | 90.5579 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6874 | 96.9552 | 98.4307 | 49.3864 | 5668 | 178 | 14614 | 233 | 211 | 90.5579 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.6331 | 99.2657 | 98.0084 | 78.2327 | 14464 | 107 | 14616 | 297 | 18 | 6.0606 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.6331 | 99.2657 | 98.0084 | 78.2327 | 14464 | 107 | 14616 | 297 | 18 | 6.0606 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1900 | 99.0255 | 97.3686 | 74.3160 | 14429 | 142 | 14616 | 395 | 10 | 2.5317 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7421 | 99.5938 | 99.8908 | 50.6550 | 14710 | 60 | 14636 | 16 | 7 | 43.7500 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3852 | 99.0251 | 99.7479 | 54.5094 | 14626 | 144 | 14641 | 37 | 15 | 40.5405 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 62.9779 | 59.7881 | 66.5273 | 42.2033 | 14672 | 9868 | 14642 | 7367 | 7111 | 96.5250 | |
| ckim-isaac | SNP | ti | HG002compoundhet | * | 88.7627 | 82.1776 | 96.4952 | 32.6037 | 14363 | 3115 | 14647 | 532 | 421 | 79.1353 | |
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | * | 47.7392 | 31.3764 | 99.7686 | 91.5938 | 14660 | 32063 | 14657 | 34 | 8 | 23.5294 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 72.5476 | 77.2827 | 68.3592 | 65.9014 | 13771 | 4048 | 14661 | 6786 | 3680 | 54.2293 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5687 | 99.2552 | 99.8842 | 53.3003 | 14660 | 110 | 14664 | 17 | 12 | 70.5882 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 74.4023 | 70.1058 | 79.2599 | 38.2733 | 14439 | 6157 | 14671 | 3839 | 3773 | 98.2808 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5418 | 99.2552 | 99.8299 | 54.5384 | 14660 | 110 | 14675 | 25 | 12 | 48.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1127 | 99.7563 | 96.5225 | 56.9760 | 14734 | 36 | 14683 | 529 | 422 | 79.7732 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6370 | 99.4177 | 99.8572 | 53.8488 | 14684 | 86 | 14686 | 21 | 13 | 61.9048 | |
| astatham-gatk | SNP | * | map_l150_m1_e0 | het | 86.2499 | 76.0872 | 99.5460 | 82.9944 | 14697 | 4619 | 14691 | 67 | 26 | 38.8060 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7251 | 99.4854 | 99.9660 | 53.9892 | 14694 | 76 | 14695 | 5 | 1 | 20.0000 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | * | 78.8472 | 74.5840 | 83.6274 | 80.0382 | 14702 | 5010 | 14695 | 2877 | 739 | 25.6865 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0582 | 99.4990 | 96.6586 | 57.2289 | 14696 | 74 | 14695 | 508 | 335 | 65.9449 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7252 | 99.5058 | 99.9456 | 54.0983 | 14697 | 73 | 14698 | 8 | 4 | 50.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | * | 74.6989 | 60.0098 | 98.9100 | 84.8150 | 14703 | 9798 | 14700 | 162 | 1 | 0.6173 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 74.7445 | 74.1265 | 75.3730 | 58.4574 | 14723 | 5139 | 14700 | 4803 | 4251 | 88.5072 | |
| qzeng-custom | SNP | tv | map_siren | homalt | 92.1926 | 85.9107 | 99.4656 | 52.8075 | 14811 | 2429 | 14705 | 79 | 75 | 94.9367 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7626 | 99.5735 | 99.9524 | 54.0128 | 14707 | 63 | 14708 | 7 | 2 | 28.5714 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7626 | 99.5802 | 99.9456 | 54.3815 | 14708 | 62 | 14709 | 8 | 4 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.3978 | 74.0332 | 72.7731 | 56.7536 | 14703 | 5157 | 14714 | 5505 | 3111 | 56.5123 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7762 | 99.6141 | 99.9389 | 56.2917 | 14713 | 57 | 14715 | 9 | 1 | 11.1111 | |
| anovak-vg | SNP | tv | map_l100_m2_e1 | het | 80.1681 | 92.4332 | 70.7766 | 74.1911 | 14732 | 1206 | 14718 | 6077 | 1278 | 21.0301 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8000 | 99.6479 | 99.9525 | 54.9426 | 14718 | 52 | 14720 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.3491 | 46.0834 | 48.6863 | 59.5527 | 14743 | 17249 | 14732 | 15527 | 15257 | 98.2611 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8103 | 99.7360 | 99.8847 | 56.3092 | 14731 | 39 | 14733 | 17 | 4 | 23.5294 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1334 | 94.7850 | 99.6011 | 59.6178 | 14613 | 804 | 14733 | 59 | 58 | 98.3051 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7968 | 99.7563 | 99.8374 | 54.8306 | 14734 | 36 | 14736 | 24 | 17 | 70.8333 | |