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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1594 1595 1596 1597 1598 1599 1600 1601 1602 ... 1720 1721 » 79851-79900 / 86044 show all
gduggal-snapplat	SNP	ti	map_l150_m1_e0	het	92.8712	92.3848	93.3627	86.3201	11428	942	11450	814	456	56.0197
rpoplin-dv42	INDEL	D6_15	*	het	97.5270	99.0079	96.0896	61.5469	11477	115	11451	466	447	95.9227
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2372	99.7214	96.7966	60.1274	11452	32	11452	379	372	98.1530
gduggal-bwaplat	SNP	tv	map_l100_m1_e0	het	84.9313	74.2687	99.1687	85.9377	11450	3967	11452	96	19	19.7917
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2837	99.7301	96.8787	61.7262	11453	31	11453	369	356	96.4770
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3728	99.7562	97.0272	61.9399	11456	28	11456	351	343	97.7208
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3687	99.7649	97.0110	61.9339	11457	27	11457	353	345	97.7337
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3940	99.7649	97.0603	61.7981	11457	27	11457	347	341	98.2709
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.8021	99.7736	95.9069	61.4948	11458	26	11458	489	478	97.7505
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3899	99.7736	97.0441	62.0464	11458	26	11458	349	339	97.1347
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.6015	99.7463	97.4826	44.5639	11404	29	11462	296	9	3.0405
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	92.6051	97.9373	87.8236	56.1886	11063	233	11468	1590	1468	92.3270
jpowers-varprowl	SNP	*	map_l150_m0_e0	*	95.7982	95.3125	96.2888	84.7317	11468	564	11468	442	141	31.9005
ckim-vqsr	INDEL	D6_15	*	het	98.8252	99.3703	98.2861	64.1967	11519	73	11469	200	170	85.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.3503	99.2642	99.4366	68.8610	11467	85	11472	65	58	89.2308
anovak-vg	SNP	ti	map_l150_m2_e0	het	75.9641	89.7213	65.8649	81.6317	11557	1324	11473	5946	1327	22.3175
astatham-gatk	INDEL	D6_15	*	het	98.7915	99.4048	98.1857	62.8008	11523	69	11473	212	175	82.5472
bgallagher-sentieon	INDEL	D6_15	*	het	98.7535	99.4306	98.0855	62.6961	11526	66	11476	224	188	83.9286
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
dgrover-gatk	INDEL	D6_15	*	het	98.8856	99.4565	98.3212	62.9800	11529	63	11479	196	167	85.2041
astatham-gatk	SNP	*	map_l100_m0_e0	homalt	99.3208	98.7866	99.8608	60.2139	11479	141	11479	16	12	75.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	89.2141	84.4066	94.6024	34.3983	5007	925	11480	655	637	97.2519
ckim-dragen	INDEL	D6_15	*	het	99.2490	99.4651	99.0338	63.3339	11530	62	11480	112	67	59.8214
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6831	99.3940	99.9739	63.4875	11482	70	11482	3	3	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6831	99.3940	99.9739	63.4875	11482	70	11482	3	3	100.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.0280	94.8346	99.3253	40.5686	6334	345	11482	78	47	60.2564
ckim-gatk	INDEL	D6_15	*	het	98.7882	99.4997	98.0868	64.1200	11534	58	11484	224	173	77.2321
ghariani-varprowl	SNP	*	map_l150_m2_e0	homalt	98.9108	98.1879	99.6443	74.5311	11487	212	11487	41	25	60.9756
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5046	99.0824	99.9304	64.6956	11446	106	11491	8	6	75.0000
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5046	99.0824	99.9304	64.6956	11446	106	11491	8	6	75.0000
jpowers-varprowl	SNP	*	map_l150_m2_e0	homalt	98.9410	98.2306	99.6618	76.3825	11492	207	11492	39	26	66.6667
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
cchapple-custom	SNP	*	map_l150_m0_e0	*	95.8209	95.5951	96.0478	81.9455	11502	530	11495	473	120	25.3700
gduggal-bwaplat	SNP	ti	map_l100_m2_e0	homalt	77.1723	62.8434	99.9652	71.1284	11506	6803	11495	4	4	100.0000
qzeng-custom	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	87.8199	86.2627	89.4344	51.7765	4584	730	11495	1358	772	56.8483
rpoplin-dv42	SNP	*	map_l100_m0_e0	homalt	99.3564	98.9759	99.7398	62.7443	11501	119	11501	30	27	90.0000
qzeng-custom	INDEL	D1_5	HG002compoundhet	*	88.1713	85.4271	91.0977	64.3947	10452	1783	11502	1124	856	76.1566
gduggal-bwafb	SNP	*	map_l100_m0_e0	homalt	99.4296	99.0017	99.8611	65.4925	11504	116	11504	16	10	62.5000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
jlack-gatk	SNP	*	map_l150_m2_e0	homalt	99.0914	98.3503	99.8438	71.6709	11506	193	11506	18	13	72.2222
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5178	99.1170	99.9219	62.2385	11450	102	11509	9	8	88.8889
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5178	99.1170	99.9219	62.2385	11450	102	11509	9	8	88.8889
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.6620	99.4893	95.9007	73.2635	11493	59	11510	492	263	53.4553
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.6620	99.4893	95.9007	73.2635	11493	59	11510	492	263	53.4553

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