PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79651-79700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2328 | 95.1446 | 99.4146 | 48.4901 | 921 | 47 | 11209 | 66 | 66 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.7857 | 94.3579 | 95.2175 | 45.4647 | 11205 | 670 | 11209 | 563 | 510 | 90.5861 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7471 | 99.5042 | 99.9911 | 53.7923 | 11240 | 56 | 11209 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.9539 | 95.3891 | 85.1048 | 47.7198 | 4241 | 205 | 11210 | 1962 | 925 | 47.1458 | |
| ckim-isaac | SNP | ti | map_l100_m2_e1 | homalt | 75.4653 | 60.6143 | 99.9554 | 56.7172 | 11210 | 7284 | 11210 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.6799 | 99.4589 | 99.9020 | 69.8014 | 11212 | 61 | 11212 | 11 | 10 | 90.9091 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.5109 | 97.6402 | 99.3972 | 56.5597 | 11213 | 271 | 11213 | 68 | 60 | 88.2353 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | homalt | 99.6712 | 99.4855 | 99.8575 | 68.3134 | 11215 | 58 | 11215 | 16 | 12 | 75.0000 | |
| jli-custom | SNP | * | map_l150_m1_e0 | homalt | 99.6978 | 99.4855 | 99.9109 | 67.4251 | 11215 | 58 | 11215 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | homalt | 99.7067 | 99.5121 | 99.9020 | 67.3803 | 11218 | 55 | 11218 | 11 | 8 | 72.7273 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | * | 98.9506 | 98.8287 | 99.0728 | 74.8529 | 11222 | 133 | 11220 | 105 | 61 | 58.0952 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7960 | 99.6105 | 99.9822 | 54.2557 | 11252 | 44 | 11220 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | tv | map_l150_m2_e0 | * | 99.0817 | 98.8287 | 99.3360 | 73.0560 | 11222 | 133 | 11221 | 75 | 23 | 30.6667 | |
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | homalt | 99.7245 | 99.5210 | 99.9288 | 67.8086 | 11219 | 54 | 11221 | 8 | 7 | 87.5000 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | * | 99.2922 | 98.8287 | 99.7600 | 74.2574 | 11222 | 133 | 11222 | 27 | 12 | 44.4444 | |
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | het | 73.2588 | 58.0710 | 99.2046 | 91.8292 | 11217 | 8099 | 11225 | 90 | 26 | 28.8889 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | * | 98.6899 | 97.5830 | 99.8222 | 64.8925 | 11224 | 278 | 11226 | 20 | 2 | 10.0000 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | * | 98.2503 | 98.9080 | 97.6013 | 79.0121 | 11231 | 124 | 11230 | 276 | 27 | 9.7826 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.7690 | 99.6274 | 99.9110 | 70.9129 | 11231 | 42 | 11231 | 10 | 10 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | homalt | 99.7513 | 99.6186 | 99.8844 | 70.3814 | 11230 | 43 | 11232 | 13 | 13 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5570 | 99.4777 | 99.6364 | 55.6678 | 11237 | 59 | 11234 | 41 | 40 | 97.5610 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | homalt | 97.2353 | 95.0114 | 99.5658 | 80.8094 | 11237 | 590 | 11237 | 49 | 20 | 40.8163 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | * | 94.1240 | 97.9830 | 90.5575 | 83.2923 | 11270 | 232 | 11240 | 1172 | 51 | 4.3515 | |
| ciseli-custom | SNP | * | HG002compoundhet | het | 65.9081 | 78.7276 | 56.6789 | 49.8597 | 11162 | 3016 | 11240 | 8591 | 230 | 2.6772 | |
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | homalt | 99.7427 | 99.7250 | 99.7604 | 71.2100 | 11242 | 31 | 11242 | 27 | 10 | 37.0370 | |
| hfeng-pmm2 | INDEL | D6_15 | * | het | 98.1073 | 97.3775 | 98.8481 | 59.1502 | 11288 | 304 | 11242 | 131 | 113 | 86.2595 | |
| hfeng-pmm1 | SNP | * | map_l150_m1_e0 | homalt | 99.7516 | 99.7427 | 99.7604 | 71.3075 | 11244 | 29 | 11244 | 27 | 10 | 37.0370 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.8171 | 94.6358 | 94.9992 | 46.8433 | 11238 | 637 | 11246 | 592 | 535 | 90.3716 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | homalt | 99.7650 | 99.7782 | 99.7517 | 71.3283 | 11248 | 25 | 11248 | 28 | 11 | 39.2857 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8050 | 99.7787 | 99.8314 | 54.7146 | 11271 | 25 | 11248 | 19 | 17 | 89.4737 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | * | 99.0273 | 99.0841 | 98.9706 | 75.8842 | 11251 | 104 | 11249 | 117 | 3 | 2.5641 | |
| raldana-dualsentieon | INDEL | D6_15 | * | het | 97.8785 | 97.4810 | 98.2792 | 59.3884 | 11300 | 292 | 11251 | 197 | 187 | 94.9239 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | homalt | 98.6803 | 97.5639 | 99.8226 | 73.2845 | 11414 | 285 | 11251 | 20 | 15 | 75.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | * | 70.2141 | 54.2827 | 99.3818 | 90.4903 | 11249 | 9474 | 11253 | 70 | 25 | 35.7143 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | * | 99.3292 | 99.1193 | 99.5400 | 75.2398 | 11255 | 100 | 11253 | 52 | 14 | 26.9231 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6018 | 99.6636 | 99.5400 | 55.7604 | 11258 | 38 | 11253 | 52 | 41 | 78.8462 | |
| astatham-gatk | SNP | ti | map_l125_m2_e0 | homalt | 99.4872 | 99.0755 | 99.9023 | 65.7910 | 11253 | 105 | 11253 | 11 | 10 | 90.9091 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | * | 99.0452 | 99.1281 | 98.9624 | 78.7121 | 11256 | 99 | 11254 | 118 | 24 | 20.3390 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 81.3693 | 71.3832 | 94.6037 | 70.0040 | 11250 | 4510 | 11255 | 642 | 179 | 27.8816 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.5569 | 94.9365 | 90.2936 | 47.5778 | 11887 | 634 | 11256 | 1210 | 1034 | 85.4545 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | homalt | 99.5006 | 99.1196 | 99.8847 | 69.9640 | 11258 | 100 | 11258 | 13 | 7 | 53.8462 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6460 | 99.6990 | 99.5931 | 55.9882 | 11262 | 34 | 11258 | 46 | 37 | 80.4348 | |
| hfeng-pmm3 | INDEL | D6_15 | * | het | 98.2130 | 97.5673 | 98.8673 | 58.6531 | 11310 | 282 | 11260 | 129 | 115 | 89.1473 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | * | 94.0016 | 91.1217 | 97.0695 | 64.7141 | 11259 | 1097 | 11262 | 340 | 339 | 99.7059 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002compoundhet | * | 94.6881 | 92.0801 | 97.4481 | 64.3836 | 11266 | 969 | 11265 | 295 | 292 | 98.9831 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | * | 97.5167 | 99.7182 | 95.4103 | 79.1143 | 11323 | 32 | 11267 | 542 | 14 | 2.5830 | |
| jlack-gatk | INDEL | I1_5 | HG002compoundhet | * | 93.1060 | 91.1379 | 95.1609 | 67.4017 | 11261 | 1095 | 11268 | 573 | 557 | 97.2077 | |
| hfeng-pmm1 | INDEL | D6_15 | * | het | 98.2571 | 97.6449 | 98.8769 | 58.2726 | 11319 | 273 | 11269 | 128 | 111 | 86.7188 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.9702 | 92.4431 | 95.5486 | 30.3243 | 1260 | 103 | 11269 | 525 | 504 | 96.0000 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | * | 93.7462 | 92.1291 | 95.4211 | 64.7145 | 11272 | 963 | 11274 | 541 | 497 | 91.8669 | |