PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79551-79600 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | * | func_cds | het | 99.4778 | 98.9965 | 99.9638 | 21.3254 | 11049 | 112 | 11049 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8239 | 99.7293 | 99.9186 | 58.6595 | 11054 | 30 | 11050 | 9 | 2 | 22.2222 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8284 | 99.7474 | 99.9096 | 58.5102 | 11056 | 28 | 11052 | 10 | 4 | 40.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2011 | 99.6842 | 98.7226 | 58.1229 | 11049 | 35 | 11052 | 143 | 20 | 13.9860 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | homalt | 97.2638 | 95.1377 | 99.4870 | 75.4317 | 11055 | 565 | 11055 | 57 | 21 | 36.8421 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7742 | 99.6391 | 99.9096 | 52.3779 | 11044 | 40 | 11055 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | homalt | 99.8667 | 99.8327 | 99.9006 | 70.5235 | 11339 | 19 | 11058 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6891 | 99.7744 | 99.6038 | 58.0494 | 11059 | 25 | 11062 | 44 | 20 | 45.4545 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | homalt | 98.8738 | 98.1283 | 99.6307 | 72.3027 | 11062 | 211 | 11062 | 41 | 25 | 60.9756 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8014 | 99.7293 | 99.8736 | 52.3918 | 11054 | 30 | 11063 | 14 | 9 | 64.2857 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7791 | 99.8466 | 99.7116 | 58.4535 | 11067 | 17 | 11063 | 32 | 3 | 9.3750 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8601 | 99.8647 | 99.8556 | 55.3095 | 11069 | 15 | 11065 | 16 | 7 | 43.7500 | |
| eyeh-varpipe | INDEL | * | * | hetalt | 52.2077 | 35.9353 | 95.4130 | 76.9125 | 9069 | 16168 | 11066 | 532 | 505 | 94.9248 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9097 | 99.8737 | 99.9458 | 56.0006 | 11070 | 14 | 11066 | 6 | 5 | 83.3333 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9143 | 99.8827 | 99.9458 | 56.3849 | 11071 | 13 | 11067 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | homalt | 98.9052 | 98.1726 | 99.6488 | 74.4202 | 11067 | 206 | 11067 | 39 | 26 | 66.6667 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9052 | 99.8917 | 99.9188 | 56.2157 | 11072 | 12 | 11068 | 9 | 4 | 44.4444 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.6745 | 93.2968 | 96.0934 | 44.0771 | 11079 | 796 | 11069 | 450 | 425 | 94.4444 | |
| gduggal-bwaplat | SNP | * | func_cds | het | 99.4076 | 99.2295 | 99.5864 | 39.9773 | 11075 | 86 | 11075 | 46 | 4 | 8.6957 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.1225 | 98.0932 | 96.1709 | 56.3915 | 11215 | 218 | 11076 | 441 | 100 | 22.6757 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8692 | 99.9098 | 99.8288 | 57.6963 | 11074 | 10 | 11076 | 19 | 3 | 15.7895 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | * | 98.6727 | 97.5517 | 99.8198 | 64.8483 | 11077 | 278 | 11076 | 20 | 2 | 10.0000 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | homalt | 98.3230 | 96.7097 | 99.9910 | 63.9684 | 11081 | 377 | 11078 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e1 | homalt | 77.4376 | 63.1930 | 99.9729 | 75.4660 | 11079 | 6453 | 11079 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | func_cds | het | 99.3276 | 99.2653 | 99.3900 | 36.7079 | 11079 | 82 | 11079 | 68 | 4 | 5.8824 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | * | 91.6730 | 96.6093 | 87.2166 | 82.7232 | 11112 | 390 | 11080 | 1624 | 104 | 6.4039 | |
| jpowers-varprowl | SNP | * | func_cds | het | 99.1057 | 99.2922 | 98.9199 | 32.1729 | 11082 | 79 | 11082 | 121 | 2 | 1.6529 | |
| jlack-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.0703 | 98.3146 | 99.8379 | 69.3588 | 11083 | 190 | 11083 | 18 | 13 | 72.2222 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.9438 | 97.7871 | 81.5673 | 65.0094 | 11180 | 253 | 11085 | 2505 | 89 | 3.5529 | |
| astatham-gatk | SNP | ti | map_l100_m0_e0 | het | 88.3269 | 79.3034 | 99.6674 | 77.0849 | 11089 | 2894 | 11086 | 37 | 16 | 43.2432 | |
| ckim-isaac | SNP | ti | map_l100_m2_e0 | homalt | 75.4234 | 60.5604 | 99.9549 | 56.7558 | 11088 | 7221 | 11088 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.3029 | 96.6649 | 86.5044 | 61.6244 | 11101 | 383 | 11089 | 1730 | 1680 | 97.1098 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 63.5703 | 52.8321 | 79.7871 | 32.1688 | 3134 | 2798 | 11092 | 2810 | 2788 | 99.2171 | |
| astatham-gatk | SNP | ti | map_l125_m0_e0 | * | 92.8568 | 86.9378 | 99.6407 | 77.9287 | 11095 | 1667 | 11093 | 40 | 20 | 50.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8642 | 99.2036 | 98.5271 | 69.1157 | 11460 | 92 | 11104 | 166 | 51 | 30.7229 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8642 | 99.2036 | 98.5271 | 69.1157 | 11460 | 92 | 11104 | 166 | 51 | 30.7229 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | hetalt | 98.3546 | 97.0076 | 99.7395 | 72.4903 | 10860 | 335 | 11105 | 29 | 29 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2999 | 97.0961 | 99.5339 | 37.5098 | 11101 | 332 | 11105 | 52 | 7 | 13.4615 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | * | 70.0796 | 54.1244 | 99.3737 | 90.4802 | 11102 | 9410 | 11106 | 70 | 25 | 35.7143 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 95.8927 | 93.7179 | 98.1709 | 38.9030 | 11129 | 746 | 11110 | 207 | 127 | 61.3527 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | homalt | 97.2134 | 94.9739 | 99.5609 | 80.8017 | 11111 | 588 | 11111 | 49 | 20 | 40.8163 | |
| qzeng-custom | SNP | * | func_cds | het | 99.6863 | 99.8118 | 99.5610 | 32.9992 | 11140 | 21 | 11112 | 49 | 1 | 2.0408 | |
| asubramanian-gatk | SNP | * | func_cds | het | 99.5968 | 99.6147 | 99.5789 | 34.4684 | 11118 | 43 | 11115 | 47 | 1 | 2.1277 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.3584 | 92.3931 | 96.4091 | 46.0732 | 10239 | 843 | 11115 | 414 | 403 | 97.3430 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | * | 96.7832 | 96.6528 | 96.9140 | 81.7370 | 11117 | 385 | 11117 | 354 | 92 | 25.9887 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | * | 96.3446 | 96.7049 | 95.9869 | 79.3609 | 11123 | 379 | 11122 | 465 | 180 | 38.7097 | |
| astatham-gatk | SNP | * | func_cds | het | 99.7982 | 99.6864 | 99.9102 | 26.1346 | 11126 | 35 | 11123 | 10 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 83.4518 | 96.9037 | 73.2793 | 50.2099 | 11079 | 354 | 11126 | 4057 | 61 | 1.5036 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.0027 | 83.0403 | 70.0649 | 36.4124 | 8642 | 1765 | 11127 | 4754 | 3440 | 72.3601 | |