PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1583 1584 1585 1586 1587 1588 1589 1590 1591 ... 1720 1721 » 79301-79350 / 86044 show all
jlack-gatk	SNP	*	segdup	homalt	99.8743	99.8418	99.9069	88.3916	10726	17	10726	10	10	100.0000
ltrigg-rtg1	SNP	*	segdup	homalt	99.7351	99.9348	99.5361	88.6997	10736	7	10729	50	50	100.0000
bgallagher-sentieon	SNP	*	segdup	homalt	99.8883	99.8697	99.9069	88.1168	10729	14	10729	10	10	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3788	99.6180	99.1407	38.1189	10691	41	10730	93	1	1.0753
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5131	99.3427	99.6841	80.0486	10730	71	10730	34	12	35.2941
ckim-dragen	SNP	*	segdup	homalt	99.9022	99.8790	99.9255	87.7402	10730	13	10730	8	8	100.0000
dgrover-gatk	SNP	*	segdup	homalt	99.8976	99.8790	99.9162	88.2042	10730	13	10730	9	9	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4808	99.3427	99.6193	80.0419	10730	71	10730	41	17	41.4634
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.1500	99.3519	98.9488	79.8585	10731	70	10731	114	27	23.6842
rpoplin-dv42	SNP	*	segdup	homalt	99.8140	99.8883	99.7398	89.1939	10731	12	10731	28	28	100.0000
raldana-dualsentieon	SNP	*	segdup	homalt	99.9022	99.8883	99.9162	87.9114	10731	12	10731	9	9	100.0000
ndellapenna-hhga	SNP	*	segdup	homalt	99.7258	99.8883	99.5639	88.9154	10731	12	10731	47	47	100.0000
ltrigg-rtg2	SNP	*	segdup	homalt	99.7490	99.9628	99.5362	88.2598	10739	4	10731	50	50	100.0000
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.7576	98.3503	99.1683	60.5203	10731	180	10731	90	83	92.2222
jli-custom	SNP	*	segdup	homalt	99.9023	99.8976	99.9069	88.0536	10732	11	10732	10	10	100.0000
egarrison-hhga	SNP	*	segdup	homalt	99.7815	99.8976	99.6657	89.1087	10732	11	10732	36	36	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7675	99.8416	99.6935	39.2563	10715	17	10732	33	4	12.1212
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6239	99.8416	99.4072	41.3357	10715	17	10732	64	7	10.9375
ghariani-varprowl	SNP	*	segdup	homalt	99.4257	99.9069	98.9491	89.5722	10733	10	10734	114	65	57.0175
gduggal-bwafb	SNP	*	HG002compoundhet	homalt	99.2787	99.5826	98.9767	38.6655	10737	45	10736	111	91	81.9820
hfeng-pmm2	SNP	*	segdup	homalt	99.9116	99.9441	99.8791	88.8962	10737	6	10737	13	13	100.0000
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.2106	96.5536	99.9255	53.9316	10702	382	10737	8	3	37.5000
jpowers-varprowl	SNP	*	segdup	homalt	99.4812	99.9441	99.0225	89.9716	10737	6	10738	106	65	61.3208
hfeng-pmm1	SNP	*	segdup	homalt	99.9256	99.9535	99.8977	88.8973	10738	5	10738	11	11	100.0000
hfeng-pmm3	SNP	*	segdup	homalt	99.9395	99.9535	99.9256	88.8624	10738	5	10738	8	8	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.7497	95.9658	99.6012	27.0945	10657	448	10739	43	42	97.6744
ghariani-varprowl	SNP	tv	map_l150_m1_e0	*	96.9968	98.4146	95.6193	80.2097	10739	173	10739	492	89	18.0894
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5044	99.4538	99.5551	80.0137	10742	59	10742	48	17	35.4167
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.2389	96.9229	97.5570	48.8051	10741	341	10742	269	266	98.8848
eyeh-varpipe	SNP	ti	map_l125_m1_e0	homalt	99.8628	99.8280	99.8977	68.2342	11026	19	10743	11	6	54.5455
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5323	99.5000	99.5646	79.8322	10747	54	10747	47	15	31.9149
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.7849	99.1019	98.4699	79.4919	10704	97	10747	167	2	1.1976
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	80.9211	77.9906	84.0804	49.2093	10751	3034	10748	2035	2023	99.4103
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.1305	99.0001	99.2612	79.9407	10693	108	10748	80	26	32.5000
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5462	99.5186	99.5739	79.3195	10749	52	10749	46	13	28.2609
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.6387	99.6019	99.6756	81.2035	10758	43	10754	35	19	54.2857
qzeng-custom	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	79.5976	80.1449	79.0576	60.6684	8073	2000	10755	2849	1405	49.3155
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.7826	98.8983	96.6918	85.1220	10682	119	10756	368	69	18.7500
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	62.0729	98.0650	45.4073	82.4158	10592	209	10757	12933	236	1.8248
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1747	97.0673	99.3076	46.3948	10757	325	10757	75	72	96.0000
cchapple-custom	SNP	tv	map_l100_m0_e0	*	96.3944	97.1220	95.6777	73.2738	10765	319	10758	486	83	17.0782
gduggal-bwafb	SNP	tv	map_l150_m1_e0	*	98.4669	98.5887	98.3454	76.8340	10758	154	10758	181	38	20.9945
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
jlack-gatk	SNP	*	HG002compoundhet	homalt	99.8516	99.8516	99.8515	34.5857	10766	16	10761	16	15	93.7500
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.5170	90.9118	94.1799	42.0147	6072	607	10761	665	217	32.6316
astatham-gatk	SNP	*	HG002compoundhet	homalt	99.8748	99.8702	99.8794	34.8528	10768	14	10763	13	12	92.3077
jlack-gatk	SNP	tv	map_l150_m1_e0	*	94.3885	98.6712	90.4622	83.2378	10767	145	10765	1135	67	5.9031
gduggal-snapvard	SNP	ti	map_l125_m2_e0	homalt	97.8264	95.9500	99.7776	68.4862	10898	460	10766	24	19	79.1667
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	91.0653	90.2147	91.9320	48.7934	10713	1162	10768	945	395	41.7989

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge