PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79251-79300 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.5773 | 96.2462 | 96.9108 | 49.8130 | 10666 | 416 | 10666 | 340 | 299 | 87.9412 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| dgrover-gatk | INDEL | I1_5 | * | hetalt | 97.2805 | 94.7387 | 99.9625 | 62.4322 | 10606 | 589 | 10669 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6178 | 95.3805 | 99.9625 | 30.9240 | 10592 | 513 | 10671 | 4 | 3 | 75.0000 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | homalt | 98.2873 | 96.6410 | 99.9906 | 60.9405 | 10674 | 371 | 10672 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 89.9321 | 98.7700 | 82.5458 | 58.4226 | 10600 | 132 | 10674 | 2257 | 114 | 5.0510 | |
| jmaeng-gatk | SNP | * | HG002compoundhet | homalt | 99.4551 | 99.0262 | 99.8877 | 35.0471 | 10677 | 105 | 10676 | 12 | 11 | 91.6667 | |
| ckim-gatk | SNP | * | HG002compoundhet | homalt | 99.4644 | 99.0354 | 99.8971 | 35.0629 | 10678 | 104 | 10677 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.3372 | 98.5927 | 92.2897 | 84.7602 | 10649 | 152 | 10677 | 892 | 112 | 12.5561 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1042 | 99.4409 | 98.7698 | 49.5614 | 10672 | 60 | 10678 | 133 | 13 | 9.7744 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6600 | 95.4525 | 99.9719 | 30.6839 | 10600 | 505 | 10680 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | * | hetalt | 97.2375 | 95.2479 | 99.3119 | 61.7967 | 10663 | 532 | 10681 | 74 | 69 | 93.2432 | |
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | * | 91.8069 | 96.6258 | 87.4458 | 78.2460 | 10710 | 374 | 10685 | 1534 | 85 | 5.5411 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.4422 | 96.4266 | 98.4794 | 49.9423 | 10686 | 396 | 10686 | 165 | 162 | 98.1818 | |
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | homalt | 97.1242 | 94.8195 | 99.5437 | 79.7473 | 10689 | 584 | 10689 | 49 | 20 | 40.8163 | |
| jpowers-varprowl | INDEL | D6_15 | * | het | 70.9404 | 91.9945 | 57.7285 | 54.4042 | 10664 | 928 | 10689 | 7827 | 7764 | 99.1951 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5419 | 95.5335 | 99.6365 | 30.2678 | 10609 | 496 | 10690 | 39 | 38 | 97.4359 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | homalt | 96.1466 | 99.1282 | 93.3392 | 44.8696 | 10688 | 94 | 10692 | 763 | 275 | 36.0419 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | * | 98.8720 | 98.0022 | 99.7574 | 65.7671 | 10694 | 218 | 10693 | 26 | 6 | 23.0769 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3258 | 97.0402 | 99.6459 | 43.8344 | 10754 | 328 | 10693 | 38 | 34 | 89.4737 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7473 | 99.3571 | 94.2711 | 57.1736 | 10663 | 69 | 10696 | 650 | 69 | 10.6154 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5812 | 99.7018 | 99.4609 | 42.3318 | 10700 | 32 | 10700 | 58 | 2 | 3.4483 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 98.7964 | 96.1027 | 79.7737 | 10671 | 130 | 10702 | 434 | 19 | 4.3779 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | homalt | 55.9994 | 38.8911 | 99.9813 | 79.7534 | 10704 | 16819 | 10704 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4564 | 99.7391 | 99.1754 | 42.0292 | 10704 | 28 | 10704 | 89 | 2 | 2.2472 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6358 | 95.7046 | 99.6464 | 30.5076 | 10628 | 477 | 10709 | 38 | 37 | 97.3684 | |
| gduggal-bwafb | SNP | * | segdup | homalt | 99.7625 | 99.6928 | 99.8322 | 89.4414 | 10710 | 33 | 10710 | 18 | 18 | 100.0000 | |
| cchapple-custom | SNP | * | segdup | homalt | 99.8463 | 99.8790 | 99.8136 | 87.7694 | 10730 | 13 | 10710 | 20 | 20 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5046 | 98.2128 | 94.8548 | 61.3261 | 10716 | 195 | 10711 | 581 | 92 | 15.8348 | |
| gduggal-snapfb | SNP | * | segdup | homalt | 99.6002 | 99.7114 | 99.4891 | 90.4625 | 10712 | 31 | 10711 | 55 | 17 | 30.9091 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0614 | 99.8136 | 98.3203 | 43.6922 | 10712 | 20 | 10712 | 183 | 5 | 2.7322 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5533 | 98.7871 | 98.3205 | 78.4263 | 10670 | 131 | 10713 | 183 | 3 | 1.6393 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 74.5124 | 79.7221 | 69.9419 | 60.7095 | 9982 | 2539 | 10713 | 4604 | 2731 | 59.3180 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2583 | 99.5434 | 98.9748 | 37.3981 | 10683 | 49 | 10716 | 111 | 5 | 4.5045 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8882 | 99.8789 | 99.8975 | 38.7986 | 10719 | 13 | 10717 | 11 | 5 | 45.4545 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | * | 98.9384 | 98.2221 | 99.6652 | 71.6791 | 10718 | 194 | 10718 | 36 | 17 | 47.2222 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9752 | 96.7154 | 99.2683 | 46.8913 | 10718 | 364 | 10718 | 79 | 74 | 93.6709 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9618 | 96.7154 | 99.2407 | 47.8941 | 10718 | 364 | 10718 | 82 | 78 | 95.1220 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | * | 96.3071 | 96.6979 | 95.9195 | 73.9602 | 10718 | 366 | 10719 | 456 | 169 | 37.0614 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.2963 | 71.7737 | 88.5804 | 40.3166 | 9894 | 3891 | 10720 | 1382 | 1368 | 98.9870 | |
| ndellapenna-hhga | SNP | * | HG002compoundhet | homalt | 98.7381 | 99.4064 | 98.0787 | 35.7852 | 10718 | 64 | 10720 | 210 | 197 | 93.8095 | |
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | * | 96.7509 | 96.7160 | 96.7858 | 76.5215 | 10720 | 364 | 10720 | 356 | 89 | 25.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5866 | 99.8975 | 99.2777 | 41.4403 | 10721 | 11 | 10721 | 78 | 1 | 1.2821 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4573 | 99.8975 | 99.0210 | 40.1856 | 10721 | 11 | 10721 | 106 | 1 | 0.9434 | |
| egarrison-hhga | SNP | * | HG002compoundhet | homalt | 99.2639 | 99.4064 | 99.1218 | 35.3785 | 10718 | 64 | 10722 | 95 | 82 | 86.3158 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 53.3229 | 48.2739 | 59.5513 | 59.8591 | 7761 | 8316 | 10724 | 7284 | 5656 | 77.6496 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 53.3229 | 48.2739 | 59.5513 | 59.8591 | 7761 | 8316 | 10724 | 7284 | 5656 | 77.6496 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7641 | 99.8350 | 99.6932 | 57.1024 | 10893 | 18 | 10724 | 33 | 14 | 42.4242 | |
| astatham-gatk | SNP | * | segdup | homalt | 99.8696 | 99.8324 | 99.9068 | 88.1147 | 10725 | 18 | 10725 | 10 | 10 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5868 | 99.9441 | 99.2321 | 39.7088 | 10726 | 6 | 10726 | 83 | 1 | 1.2048 | |