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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1576 1577 1578 1579 1580 1581 1582 1583 1584 ... 1720 1721 » 78951-79000 / 86044 show all
jpowers-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.5573	99.8218	95.3932	57.7564	10084	18	10105	488	257	52.6639
ghariani-varprowl	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.8554	99.9208	95.8736	65.4859	10089	8	10107	435	273	62.7586
jpowers-varprowl	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.9694	99.9307	96.0837	66.5958	10090	7	10108	412	277	67.2330
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	57.2793	53.5509	61.5656	80.5733	7367	6390	10114	6314	1790	28.3497
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	57.2793	53.5509	61.5656	80.5733	7367	6390	10114	6314	1790	28.3497
anovak-vg	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.6409	98.1777	97.1099	61.1163	9913	184	10114	301	207	68.7708
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	49.3962	45.5461	53.9573	55.1768	10134	12116	10117	8633	8451	97.8918
gduggal-bwaplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.3161	87.6212	99.8027	73.3610	10122	1430	10118	20	17	85.0000
gduggal-bwaplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.3161	87.6212	99.8027	73.3610	10122	1430	10118	20	17	85.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.4016	97.3287	99.4985	47.5257	10129	278	10118	51	47	92.1569
gduggal-bwavard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	94.0248	95.3430	92.7426	84.9164	10298	503	10121	792	175	22.0960
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.5282	97.7986	91.4694	41.2757	10129	228	10122	944	934	98.9407
ckim-isaac	INDEL	I1_5	HG002compoundhet	*	86.4991	81.9764	91.5499	51.1004	10129	2227	10130	935	794	84.9198
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	82.9662	72.2705	97.3775	48.0824	10141	3891	10137	273	266	97.4359
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	50.5742	45.9865	56.1787	51.4566	10232	12018	10138	7908	7671	97.0030
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6120	99.6463	99.5777	54.2814	10142	36	10139	43	40	93.0233
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7100	99.6561	99.7639	53.8981	10143	35	10141	24	24	100.0000
gduggal-snapplat	SNP	*	map_l150_m2_e0	homalt	92.8770	86.7681	99.9113	74.6788	10151	1548	10142	9	9	100.0000
gduggal-snapplat	SNP	tv	map_l150_m2_e0	*	92.0132	89.3351	94.8569	86.0094	10144	1211	10144	550	292	53.0909
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8131	99.6954	99.9311	54.3062	10147	31	10148	7	7	100.0000
gduggal-snapvard	SNP	tv	map_l125_m2_e0	het	90.6936	97.4909	84.7824	82.7072	10180	262	10151	1822	114	6.2569
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	77.6152	64.0108	98.5632	45.9265	10693	6012	10153	148	131	88.5135
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	77.6152	64.0108	98.5632	45.9265	10693	6012	10153	148	131	88.5135
ciseli-custom	INDEL	D6_15	*	het	77.1133	84.3154	71.0447	55.4839	9773	1818	10153	4138	1402	33.8811
eyeh-varpipe	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	56.5705	40.1699	95.6035	76.3129	6193	9224	10155	467	451	96.5739
ltrigg-rtg2	SNP	tv	map_l125_m2_e0	het	98.4778	97.2706	99.7153	57.2310	10157	285	10156	29	2	6.8966
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7349	99.8133	99.6566	54.0176	10159	19	10157	35	30	85.7143
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9017	99.8231	99.9803	53.8406	10160	18	10160	2	2	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9066	99.8428	99.9705	54.1001	10162	16	10162	3	3	100.0000
jlack-gatk	INDEL	I1_5	HG002compoundhet	hetalt	94.9037	90.3820	99.9017	57.2515	10102	1075	10162	10	9	90.0000
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7987	99.8821	99.7155	54.3488	10166	12	10164	29	24	82.7586
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9214	99.9312	99.9116	54.3329	10171	7	10167	9	9	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8607	94.4535	99.3939	46.6406	9894	581	10167	62	61	98.3871
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9263	99.9017	99.9509	53.9245	10168	10	10168	5	5	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9214	99.9214	99.9214	54.3038	10170	8	10169	8	8	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9214	99.9410	54.0442	10170	8	10170	6	6	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9116	99.9214	99.9018	54.3272	10170	8	10170	10	10	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9361	99.9509	99.9214	54.3780	10173	5	10173	8	8	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9411	99.9607	99.9214	54.0979	10174	4	10174	8	8	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9362	99.9607	99.9116	54.3466	10174	4	10174	9	9	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9607	99.9018	54.3175	10174	4	10174	10	10	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9411	99.9607	99.9214	54.3285	10174	4	10174	8	8	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9362	99.9607	99.9116	54.3220	10174	4	10174	9	9	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9509	99.9705	99.9313	54.2320	10175	3	10175	7	7	100.0000
gduggal-snapplat	SNP	*	map_l100_m0_e0	homalt	93.3571	87.6248	99.8920	65.0376	10182	1438	10176	11	11	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.8678	98.2992	99.4430	40.4688	10230	177	10177	57	24	42.1053
gduggal-bwaplat	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	78.1296	65.4234	96.9610	81.1140	10191	5386	10178	319	94	29.4671
jlack-gatk	INDEL	I1_5	*	hetalt	94.8892	90.3796	99.8725	62.8887	10118	1077	10180	13	12	92.3077
ciseli-custom	SNP	ti	map_l100_m0_e0	het	78.5726	72.8313	85.2966	78.4054	10184	3799	10181	1755	57	3.2479
mlin-fermikit	INDEL	D1_5	HG002complexvar	homalt	96.1786	96.9145	95.4537	57.9255	10271	327	10183	485	469	96.7010

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