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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
78901-78950 / 86044 show all
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.3321
99.2576
91.7054
59.1877
100277510072911306
33.5895
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.5636
99.5347
95.6691
57.4517
100554710073456383
83.9912
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8514
99.7426
99.9603
49.3467
10076261007644
100.0000
jpowers-varprowlSNPtvmap_l125_m2_e0het
96.3204
96.5141
96.1274
80.0949
100783641007840694
23.1527
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8563
99.7624
99.9504
49.5168
10078241007855
100.0000
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9682
99.6336
96.3576
67.1524
100603710079381340
89.2388
eyeh-varpipeINDELD6_15*het
91.9882
92.1325
91.8444
46.7075
1068091210079895860
96.0894
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8860
99.8316
99.9405
61.6312
10080171008064
66.6667
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8910
99.8415
99.9405
60.8743
10081161008166
100.0000
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8415
99.9603
61.7282
10081161008144
100.0000
hfeng-pmm1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9059
99.8514
99.9603
61.6429
10082151008244
100.0000
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.6612
95.4654
99.9603
33.6622
100004751008243
75.0000
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8514
99.9504
61.6260
10082151008255
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.4632
95.4749
99.5360
33.1882
10001474100834746
97.8723
hfeng-pmm3SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9108
99.8613
99.9603
61.0721
10083141008344
100.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8762
99.8119
99.9405
50.3909
10083191008365
83.3333
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8811
99.8613
99.9009
61.7921
100831410083102
20.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
97.9616
97.0020
98.9403
47.2355
1009531210084108100
92.5926
ckim-isaacINDELD6_15*het
91.7291
91.4941
91.9653
44.9050
1060698610084881656
74.4608
cchapple-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8767
99.8821
99.8712
51.6311
1016612100841311
84.6154
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9158
99.8613
99.9703
61.4918
10083141008533
100.0000
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8317
99.9703
49.2989
10085171008533
100.0000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9306
99.8911
99.9703
61.3700
10086111008633
100.0000
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.2998
97.7430
96.8606
48.6593
987422810089327264
80.7339
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.6959
95.5227
99.9703
33.3773
100064691008932
66.6667
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9208
99.9703
62.5348
1008981008933
100.0000
jlack-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8960
99.8713
99.9208
48.6105
10089131008987
87.5000
mlin-fermikitSNP*map_l125_m2_e0homalt
66.1120
58.0777
76.7260
57.2932
1009172841009130612900
94.7403
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7242
99.5972
99.8516
52.5270
1013741100921511
73.3333
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
90.9582
83.4711
99.9208
44.6727
8081601009288
100.0000
cchapple-customINDELD1_5HG002complexvarhomalt
99.5858
99.5565
99.6150
53.3069
1055147100923936
92.3077
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8713
99.8218
99.9208
48.8376
10084181009388
100.0000
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9208
99.9604
49.7187
1009481009443
75.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9505
99.9307
99.9703
51.1679
1009571009532
66.6667
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9307
99.9505
49.4545
1009571009553
60.0000
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50het
61.1186
54.5495
69.4865
69.7213
859771631009544331247
28.1299
qzeng-customINDEL*lowcmp_SimpleRepeat_triTR_11to50*
97.5217
98.2474
96.8067
41.4913
66151181009533384
25.2252
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7686
99.5382
100.0000
50.6863
10131471009500
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9456
99.9406
99.9505
49.3379
1009661009655
100.0000
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9554
99.9406
99.9703
49.4797
1009661009633
100.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
93.0148
97.6827
88.7726
47.1861
101172401009712771255
98.2772
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9703
99.9604
99.9802
50.4100
1009841009822
100.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.2885
97.1365
99.4681
47.3280
10109298100985438
70.3704
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9604
99.9703
99.9505
48.8948
1009931009955
100.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.3558
97.1558
99.5859
47.3310
10111296101014237
88.0952
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
97.5627
95.6563
99.5467
33.3070
10020455101024645
97.8261
ciseli-customSNP*map_l100_m0_e0homalt
87.9778
87.2289
88.7396
61.6447
1013614841010312821041
81.2012
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.8537
97.8565
99.8715
37.6633
10135222101031313
100.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8080
99.6266
99.9901
51.1176
10140381010311
100.0000
ghariani-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8165
99.8119
95.8994
55.8743
100831910103432262
60.6481