PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78751-78800 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D1_5 | * | hetalt | 97.2784 | 94.7194 | 99.9795 | 63.7385 | 9704 | 541 | 9748 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | * | het | 96.6553 | 97.2291 | 96.0883 | 56.6301 | 9755 | 278 | 9752 | 397 | 383 | 96.4736 | |
| astatham-gatk | SNP | tv | map_l150_m2_e1 | * | 91.6416 | 84.8374 | 99.6324 | 80.3148 | 9758 | 1744 | 9756 | 36 | 13 | 36.1111 | |
| anovak-vg | SNP | tv | map_l150_m2_e0 | * | 79.2839 | 86.0062 | 73.5363 | 80.1925 | 9766 | 1589 | 9759 | 3512 | 838 | 23.8610 | |
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | * | 65.9997 | 49.5333 | 98.8657 | 90.7313 | 9764 | 9948 | 9762 | 112 | 2 | 1.7857 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | * | 45.8193 | 29.7342 | 99.8160 | 91.0946 | 9765 | 23076 | 9765 | 18 | 6 | 33.3333 | |
| jpowers-varprowl | SNP | tv | map_l125_m1_e0 | het | 96.3069 | 96.4448 | 96.1694 | 78.7859 | 9766 | 360 | 9766 | 389 | 92 | 23.6504 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.0469 | 94.0521 | 90.1255 | 39.8201 | 9788 | 619 | 9766 | 1070 | 1036 | 96.8224 | |
| raldana-dualsentieon | INDEL | I6_15 | * | het | 98.4817 | 97.7076 | 99.2683 | 55.4872 | 9803 | 230 | 9768 | 72 | 56 | 77.7778 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.5107 | 97.2293 | 99.8263 | 49.4968 | 9896 | 282 | 9768 | 17 | 17 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | * | het | 97.5570 | 97.2192 | 97.8973 | 54.2636 | 9754 | 279 | 9777 | 210 | 127 | 60.4762 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9228 | 99.1388 | 98.7077 | 45.0241 | 10015 | 87 | 9777 | 128 | 46 | 35.9375 | |
| astatham-gatk | INDEL | D1_5 | * | hetalt | 97.2343 | 95.0220 | 99.5520 | 63.2355 | 9735 | 510 | 9778 | 44 | 43 | 97.7273 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4262 | 94.1386 | 98.8277 | 32.4619 | 9797 | 610 | 9779 | 116 | 87 | 75.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.2764 | 88.2353 | 98.9284 | 63.4212 | 9780 | 1304 | 9786 | 106 | 22 | 20.7547 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.5407 | 88.2533 | 99.5021 | 62.9815 | 9782 | 1302 | 9792 | 49 | 16 | 32.6531 | |
| dgrover-gatk | INDEL | D1_5 | * | hetalt | 97.3217 | 95.1977 | 99.5427 | 63.5299 | 9753 | 492 | 9795 | 45 | 43 | 95.5556 | |
| asubramanian-gatk | SNP | tv | map_l100_m1_e0 | * | 57.1254 | 40.0024 | 99.8777 | 86.7426 | 9801 | 14700 | 9799 | 12 | 2 | 16.6667 | |
| jli-custom | INDEL | D1_5 | * | hetalt | 97.3277 | 95.2367 | 99.5126 | 64.3126 | 9757 | 488 | 9801 | 48 | 46 | 95.8333 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | het | 85.2876 | 76.1276 | 96.9535 | 90.1394 | 9806 | 3075 | 9802 | 308 | 33 | 10.7143 | |
| jlack-gatk | INDEL | I6_15 | * | het | 97.9846 | 98.0664 | 97.9029 | 60.0128 | 9839 | 194 | 9804 | 210 | 112 | 53.3333 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7481 | 97.6242 | 99.8981 | 43.0461 | 9862 | 240 | 9806 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.2570 | 93.3938 | 99.3014 | 31.9625 | 9783 | 692 | 9808 | 69 | 68 | 98.5507 | |
| hfeng-pmm2 | INDEL | I6_15 | * | het | 98.7550 | 98.1162 | 99.4021 | 57.6463 | 9844 | 189 | 9809 | 59 | 39 | 66.1017 | |
| hfeng-pmm3 | INDEL | I6_15 | * | het | 98.8597 | 98.1362 | 99.5939 | 56.2294 | 9846 | 187 | 9811 | 40 | 29 | 72.5000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.4376 | 86.6059 | 99.1115 | 59.3014 | 9783 | 1513 | 9816 | 88 | 22 | 25.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.7133 | 98.5372 | 89.3396 | 84.5796 | 10643 | 158 | 9822 | 1172 | 111 | 9.4710 | |
| hfeng-pmm1 | INDEL | I6_15 | * | het | 98.8608 | 98.2558 | 99.4734 | 57.1305 | 9858 | 175 | 9823 | 52 | 34 | 65.3846 | |
| ckim-gatk | SNP | ti | map_l150_m2_e0 | het | 85.4716 | 76.2984 | 97.1519 | 89.8925 | 9828 | 3053 | 9824 | 288 | 33 | 11.4583 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.1719 | 93.0119 | 99.5542 | 28.6148 | 9743 | 732 | 9825 | 44 | 44 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | * | hetalt | 96.8514 | 94.4363 | 99.3932 | 69.7439 | 9675 | 570 | 9828 | 60 | 59 | 98.3333 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.3849 | 98.2708 | 96.5148 | 54.3311 | 10002 | 176 | 9831 | 355 | 280 | 78.8732 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | het | 93.3381 | 93.1962 | 93.4803 | 85.9836 | 9835 | 718 | 9836 | 686 | 353 | 51.4577 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | * | 74.1036 | 59.0623 | 99.4240 | 88.9166 | 9838 | 6819 | 9838 | 57 | 13 | 22.8070 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | het | 98.4494 | 97.1855 | 99.7466 | 54.4068 | 9841 | 285 | 9840 | 25 | 2 | 8.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | * | 48.6953 | 32.2026 | 99.8174 | 91.1355 | 9844 | 20725 | 9842 | 18 | 6 | 33.3333 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | het | 86.0111 | 75.6819 | 99.6055 | 83.9600 | 9850 | 3165 | 9846 | 39 | 19 | 48.7179 | |
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | het | 90.5242 | 97.5015 | 84.4788 | 81.5577 | 9873 | 253 | 9846 | 1809 | 112 | 6.1913 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.2751 | 93.2220 | 99.5351 | 28.3303 | 9765 | 710 | 9848 | 46 | 46 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | * | het | 98.6849 | 98.5049 | 98.8656 | 60.6937 | 9883 | 150 | 9848 | 113 | 59 | 52.2124 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.2854 | 93.2411 | 99.5352 | 28.3262 | 9767 | 708 | 9850 | 46 | 46 | 100.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.1861 | 94.9340 | 89.5928 | 65.6359 | 9201 | 491 | 9857 | 1145 | 571 | 49.8690 | |
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | het | 96.2282 | 94.6262 | 97.8854 | 30.8078 | 810 | 46 | 9860 | 213 | 202 | 94.8357 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | hetalt | 98.0424 | 96.5838 | 99.5458 | 62.4013 | 9867 | 349 | 9863 | 45 | 45 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 77.1234 | 70.6347 | 84.9247 | 50.6689 | 9737 | 4048 | 9864 | 1751 | 1570 | 89.6630 | |
| ciseli-custom | INDEL | D1_5 | HG002complexvar | homalt | 84.8845 | 94.7915 | 76.8524 | 57.1696 | 10046 | 552 | 9864 | 2971 | 1988 | 66.9135 | |
| ckim-vqsr | INDEL | I6_15 | * | het | 99.0039 | 98.6943 | 99.3155 | 60.3259 | 9902 | 131 | 9866 | 68 | 49 | 72.0588 | |
| ckim-dragen | INDEL | I6_15 | * | het | 98.9990 | 98.7043 | 99.2956 | 59.4838 | 9903 | 130 | 9867 | 70 | 31 | 44.2857 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | het | 96.1554 | 93.2692 | 99.2258 | 33.4003 | 194 | 14 | 9869 | 77 | 72 | 93.5065 | |
| astatham-gatk | INDEL | I6_15 | * | het | 98.9793 | 98.7242 | 99.2358 | 59.2368 | 9905 | 128 | 9869 | 76 | 54 | 71.0526 | |