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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
76851-76900 / 86044 show all
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5233
99.0511
100.0000
35.2554
668164668100
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.2842
83.8309
91.0342
39.5768
24994826681658602
91.4894
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.3679
99.4491
99.2868
52.6423
66793766824839
81.2500
ltrigg-rtg1SNP*map_l125_m0_e0homalt
99.7091
99.5679
99.8506
69.2643
66832966831010
100.0000
hfeng-pmm3SNP*map_l125_m0_e0homalt
99.5977
99.5828
99.6125
70.7306
6684286684269
34.6154
hfeng-pmm1SNP*map_l125_m0_e0homalt
99.6052
99.5977
99.6126
70.8610
6685276685269
34.6154
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
90.7313
91.0661
90.3989
49.5222
61166006685710208
29.2958
ciseli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
96.7305
99.3032
94.2877
46.8635
6698476685405129
31.8519
ltrigg-rtg2SNPtvmap_l150_m1_e0het
97.9852
96.2712
99.7612
57.9109
66872596685161
6.2500
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5458
99.2722
99.8208
49.8653
6684496686127
58.3333
jli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6720
99.5235
99.8208
51.0416
6684326686125
41.6667
jmaeng-gatkSNP*map_l150_m2_e0homalt
72.7253
57.1502
99.9701
80.8789
66865013668622
100.0000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.3167
99.5384
99.0960
53.8093
66853166876111
18.0328
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6201
99.5533
99.6870
54.4597
6686306688217
33.3333
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5459
99.3019
99.7911
49.8616
6686476688149
64.2857
gduggal-bwafbSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.2945
99.0956
99.4942
40.3814
66846166883420
58.8235
hfeng-pmm2SNP*map_l125_m0_e0homalt
99.6276
99.6573
99.5980
70.8911
66892366892710
37.0370
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.8924
97.1669
98.6287
80.6797
668819566899328
30.1075
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.4185
93.4618
99.5685
26.7894
664746566912929
100.0000
gduggal-snapfbSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.9647
99.1698
96.7887
50.7481
668956669122241
18.4685
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.5468
98.7790
92.5194
46.8470
6634826691541498
92.0518
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.6131
99.4059
99.8211
49.8317
6693406695127
58.3333
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7691
99.7171
99.8211
53.8271
6697196696127
58.3333
gduggal-bwafbINDEL*HG002compoundhethetalt
88.3144
80.5679
97.7090
73.4740
2028748936696157155
98.7261
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5094
99.3762
99.6429
67.2531
66914266962419
79.1667
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.4855
93.5742
99.5838
26.7211
665545766992828
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7468
99.7171
99.7766
54.5091
6697196699158
53.3333
jlack-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5542
99.4802
99.6283
49.3638
66983567002514
56.0000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6815
93.6024
99.9702
26.8790
6657455670121
50.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7024
99.7469
99.6579
53.4220
6699176701238
34.7826
jpowers-varprowlINDEL*map_siren*
91.5569
90.4453
92.6961
81.8403
67027086701528440
83.3333
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2695
92.8074
100.0000
26.8341
6658516670200
gduggal-bwafbINDELI1_5HG002compoundhethet
91.6005
86.8235
96.9338
46.2155
7381126702212180
84.9057
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
69.1351
77.4877
62.4080
42.2541
2998871670240373716
92.0486
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4656
99.3180
99.6136
37.1650
66994667032625
96.1538
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7995
99.6294
99.9702
32.6604
672025670321
50.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6877
99.7767
99.5988
53.6597
6701156703278
29.6296
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6951
99.7767
99.6136
53.1211
6701156703269
34.6154
asubramanian-gatkINDEL*map_siren*
93.9319
90.2024
97.9830
94.1412
6684726670413823
16.6667
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7099
99.7915
99.6285
54.4538
6702146704258
32.0000
ckim-dragenINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.6954
99.6733
99.7175
49.5386
67112267071912
63.1579
gduggal-bwafbSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.0823
99.0065
97.1751
54.0902
667767670819542
21.5385
egarrison-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6287
99.4366
99.8215
36.6123
67073867091210
83.3333
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2237
99.4958
98.9530
45.8387
6710346710711
1.4085
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.6881
99.8364
49.1224
6712216714116
54.5455
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7548
99.6881
99.8216
48.8361
6712216714128
66.6667
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8441
99.8073
99.8810
33.7603
673213671481
12.5000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50het
95.6807
99.1251
92.4676
62.1593
66855967155478
1.4625
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7994
99.7475
99.8514
49.4629
6716176718106
60.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8169
93.8695
99.9554
27.7467
6676436671832
66.6667