PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
76751-76800 / 86044 show all
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.8845
99.1738
98.5968
78.6472
6602556605941
1.0638
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.8484
99.0268
98.6706
57.0089
66146566068988
98.8764
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.8222
97.8503
97.7942
34.8099
66001456606149125
83.8926
ciseli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
84.0742
97.1085
74.1248
53.6075
65491956606230639
1.6912
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.0900
94.8591
99.4283
33.0075
653235466093838
100.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.1976
99.0717
99.3238
51.2490
66176266104542
93.3333
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
82.9460
70.9983
99.7285
65.0277
6600269666111818
100.0000
rpoplin-dv42SNP*map_l125_m0_e0homalt
99.0933
98.5101
99.6834
69.3810
661210066122120
95.2381
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
74.4014
87.0872
64.9416
71.9724
559182966133570542
15.1821
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
74.4014
87.0872
64.9416
71.9724
559182966133570542
15.1821
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
50.2462
41.8069
62.9545
59.3735
26843736661438922524
64.8510
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
50.2462
41.8069
62.9545
59.3735
26843736661438922524
64.8510
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4797
95.7302
99.2944
52.9989
661429566144742
89.3617
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5262
99.3991
99.6536
77.7226
6617406617239
39.1304
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5562
99.3991
99.7137
77.6038
6617406617195
26.3158
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1659
93.1102
99.4290
31.4906
662249066173838
100.0000
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.9410
92.7025
99.4141
25.1041
659351966173938
97.4359
bgallagher-sentieonINDELD16_PLUS**
97.6204
97.7889
97.4525
70.3579
66341506618173117
67.6301
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2560
99.0686
99.4441
78.7870
65956266193715
40.5405
gduggal-bwaplatINDELI6_15HG002compoundhet*
84.8012
75.3988
96.8828
44.4562
661721596620213132
61.9718
gduggal-snapplatSNPtvmap_l100_m0_e0het
92.3125
91.6921
92.9413
85.1008
66226006623503271
53.8767
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.3251
99.4893
99.1616
77.5985
66233466235611
19.6429
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2060
98.6004
99.8192
50.8699
6622946624123
25.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5417
99.5043
99.5791
77.6913
6624336624289
32.1429
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4003
99.3113
99.4894
56.4059
66334666253432
94.1176
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5642
99.5193
99.6091
77.5046
6625326625268
30.7692
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
84.7836
98.6301
74.3463
50.8169
662492662522862211
96.7192
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9093
94.7026
99.2213
43.0691
654336666265248
92.3077
qzeng-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
86.7930
84.0381
89.7346
47.2948
20273856626758648
85.4881
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.7103
96.0354
99.4447
23.8949
661327366263736
97.2973
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3080
97.2255
99.4149
40.8780
662318966273939
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6468
99.5944
99.6992
79.9741
66302766282011
55.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.1991
98.6599
99.7442
50.1650
6626906628177
41.1765
ckim-vqsrINDELD16_PLUS**
97.9266
97.9363
97.9170
71.5505
66441406628141105
74.4681
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5944
99.5794
99.6093
76.9540
6629286629266
23.0769
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5047
99.5794
99.4300
77.4061
6629286629387
18.4211
gduggal-bwafbSNP*map_l125_m0_e0homalt
99.3333
98.7783
99.8945
72.5403
663082663076
85.7143
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.2959
98.6897
99.9096
50.3888
662888663063
50.0000
ckim-gatkINDELD16_PLUS**
97.7762
97.9953
97.5581
71.4634
66481366632166106
63.8554
astatham-gatkINDELD16_PLUS**
97.8775
98.0100
97.7454
70.7802
66491356633153104
67.9739
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.3112
98.7493
99.8796
50.2546
663284663482
25.0000
dgrover-gatkINDELD16_PLUS**
97.8781
98.0395
97.7172
70.6733
66511336635155103
66.4516
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.9858
99.4610
98.5152
56.4669
664336663510098
98.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.2554
98.9184
99.5947
75.9330
65857266352713
48.1481
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0969
99.4760
98.7206
57.2310
66443566368683
96.5116
jli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3153
97.1961
99.4606
33.3866
662119166383635
97.2222
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
93.6937
90.7254
96.8627
52.3369
19762026638215185
86.0465
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0824
99.5209
98.6478
57.7394
66473266399189
97.8022
dgrover-gatkSNP*map_l125_m0_e0homalt
99.3639
98.9124
99.8196
67.9886
6639736639128
66.6667
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4779
95.9039
99.1043
49.4530
662628366396051
85.0000