PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76551-76600 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3852 | 95.7925 | 99.0319 | 61.6504 | 6056 | 266 | 6342 | 62 | 53 | 85.4839 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | * | 95.3719 | 95.7171 | 95.0292 | 79.3444 | 6347 | 284 | 6347 | 332 | 129 | 38.8554 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.5092 | 75.5024 | 90.9494 | 56.1947 | 6349 | 2060 | 6351 | 632 | 617 | 97.6266 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | * | 89.3998 | 96.0489 | 83.6117 | 82.4411 | 6369 | 262 | 6357 | 1246 | 62 | 4.9759 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | * | 96.8429 | 94.6197 | 99.1732 | 57.6142 | 6419 | 365 | 6357 | 53 | 36 | 67.9245 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | * | 95.8974 | 95.8830 | 95.9119 | 81.8721 | 6358 | 273 | 6358 | 271 | 70 | 25.8303 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 90.7742 | 93.8101 | 87.9287 | 67.8048 | 5850 | 386 | 6359 | 873 | 348 | 39.8625 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.8526 | 95.8946 | 79.3688 | 62.7255 | 5606 | 240 | 6363 | 1654 | 1576 | 95.2842 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.8526 | 95.8946 | 79.3688 | 62.7255 | 5606 | 240 | 6363 | 1654 | 1576 | 95.2842 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2201 | 93.2179 | 99.4222 | 33.5409 | 6350 | 462 | 6367 | 37 | 31 | 83.7838 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | homalt | 93.0222 | 87.0616 | 99.8589 | 71.6753 | 6379 | 948 | 6370 | 9 | 9 | 100.0000 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | * | 77.7546 | 81.7199 | 74.1564 | 85.3644 | 6424 | 1437 | 6373 | 2221 | 611 | 27.5101 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | * | 96.9914 | 94.9292 | 99.1450 | 56.0917 | 6440 | 344 | 6378 | 55 | 35 | 63.6364 | |
| ckim-isaac | SNP | * | map_l150_m0_e0 | * | 69.2458 | 53.0336 | 99.7343 | 81.0939 | 6381 | 5651 | 6381 | 17 | 4 | 23.5294 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.6677 | 96.0493 | 95.2892 | 79.6573 | 6394 | 263 | 6392 | 316 | 202 | 63.9241 | |
| anovak-vg | SNP | * | map_l250_m2_e0 | * | 75.1311 | 81.7121 | 69.5312 | 91.5463 | 6443 | 1442 | 6392 | 2801 | 650 | 23.2060 | |
| cchapple-custom | SNP | tv | map_l125_m0_e0 | * | 95.8633 | 96.5164 | 95.2189 | 78.5014 | 6400 | 231 | 6393 | 321 | 56 | 17.4455 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | * | 98.1288 | 96.4862 | 99.8283 | 59.5773 | 6398 | 233 | 6396 | 11 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | hetalt | 99.8980 | 99.8273 | 99.9687 | 18.5958 | 578 | 1 | 6398 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8075 | 94.3048 | 64.7869 | 87.6558 | 6491 | 392 | 6399 | 3478 | 109 | 3.1340 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6258 | 94.3116 | 94.9422 | 66.8176 | 6350 | 383 | 6401 | 341 | 317 | 92.9619 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | homalt | 97.7145 | 95.5453 | 99.9844 | 64.7518 | 6413 | 299 | 6411 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 91.9132 | 85.7987 | 98.9660 | 29.1571 | 6102 | 1010 | 6413 | 67 | 58 | 86.5672 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | het | 67.0117 | 50.6238 | 99.0887 | 93.0436 | 6411 | 6253 | 6415 | 59 | 19 | 32.2034 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.6857 | 62.3443 | 99.5964 | 36.2241 | 6457 | 3900 | 6416 | 26 | 21 | 80.7692 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | homalt | 98.3897 | 97.0501 | 99.7668 | 70.8893 | 6514 | 198 | 6417 | 15 | 11 | 73.3333 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 40.1009 | 36.3420 | 44.7271 | 57.2051 | 6422 | 11249 | 6417 | 7930 | 7870 | 99.2434 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 40.1009 | 36.3420 | 44.7271 | 57.2051 | 6422 | 11249 | 6417 | 7930 | 7870 | 99.2434 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.4325 | 88.9626 | 98.3752 | 33.8873 | 6569 | 815 | 6418 | 106 | 80 | 75.4717 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.6982 | 92.8933 | 98.6777 | 52.9173 | 6418 | 491 | 6418 | 86 | 75 | 87.2093 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.4799 | 95.1964 | 99.8756 | 26.6788 | 6421 | 324 | 6423 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 77.4124 | 95.3132 | 65.1724 | 81.3112 | 6345 | 312 | 6426 | 3434 | 185 | 5.3873 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6955 | 94.4156 | 94.9771 | 66.7371 | 6357 | 376 | 6429 | 340 | 300 | 88.2353 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1428 | 99.3625 | 98.9241 | 34.6525 | 6702 | 43 | 6436 | 70 | 24 | 34.2857 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 81.4700 | 91.7896 | 73.2362 | 71.7064 | 5601 | 501 | 6436 | 2352 | 386 | 16.4116 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.8735 | 96.4965 | 99.2905 | 49.4936 | 6445 | 234 | 6437 | 46 | 35 | 76.0870 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.4660 | 96.4965 | 98.4552 | 52.4855 | 6445 | 234 | 6437 | 101 | 99 | 98.0198 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.4780 | 89.9466 | 99.4903 | 27.1930 | 6397 | 715 | 6441 | 33 | 28 | 84.8485 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.9644 | 96.5713 | 99.3983 | 49.3594 | 6450 | 229 | 6443 | 39 | 35 | 89.7436 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.1673 | 95.3799 | 89.1641 | 87.4464 | 6565 | 318 | 6443 | 783 | 169 | 21.5837 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.2112 | 93.3565 | 99.2459 | 50.4272 | 6450 | 459 | 6449 | 49 | 44 | 89.7959 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| eyeh-varpipe | SNP | ti | * | hetalt | 99.5363 | 99.8282 | 99.2460 | 38.4448 | 581 | 1 | 6450 | 49 | 47 | 95.9184 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1063 | 94.3753 | 100.0000 | 23.8971 | 6443 | 384 | 6452 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9389 | 94.3899 | 99.6295 | 24.2810 | 6444 | 383 | 6453 | 24 | 24 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.6924 | 96.0989 | 95.2894 | 42.1888 | 6454 | 262 | 6453 | 319 | 300 | 94.0439 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.7409 | 93.7237 | 97.8469 | 79.8823 | 6451 | 432 | 6453 | 142 | 16 | 11.2676 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | hetalt | 85.9482 | 75.6238 | 99.5374 | 35.2988 | 6456 | 2081 | 6455 | 30 | 20 | 66.6667 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3477 | 97.0107 | 99.7221 | 77.9349 | 6458 | 199 | 6459 | 18 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.9937 | 93.4578 | 98.6711 | 50.7411 | 6457 | 452 | 6460 | 87 | 83 | 95.4023 | |