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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1509 1510 1511 1512 1513 1514 1515 1516 1517 ... 1720 1721 » 75601-75650 / 86044 show all
hfeng-pmm3	SNP	tv	segdup	het	99.6218	99.6974	99.5464	90.8847	5271	16	5267	24	0	0.0000
asubramanian-gatk	SNP	ti	map_l150_m2_e0	*	40.8545	25.6874	99.7538	94.2642	5269	15243	5267	13	5	38.4615
jlack-gatk	SNP	tv	segdup	het	96.4748	99.7163	93.4374	95.6607	5272	15	5268	370	0	0.0000
hfeng-pmm2	SNP	tv	segdup	het	99.5467	99.7541	99.3402	91.9297	5274	13	5270	35	0	0.0000
astatham-gatk	SNP	ti	func_cds	homalt	99.9526	99.9052	100.0000	19.7136	5270	5	5270	0	0
bgallagher-sentieon	SNP	tv	segdup	het	99.2561	99.7541	98.7631	92.1695	5274	13	5270	66	0	0.0000
cchapple-custom	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.3326	5271	4	5270	0	0
ltrigg-rtg2	SNP	ti	func_cds	homalt	99.9526	99.9052	100.0000	20.2844	5270	5	5270	0	0
jlack-gatk	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.9058	5271	4	5271	0	0
jli-custom	SNP	tv	segdup	het	99.3872	99.6974	99.0789	90.9422	5271	16	5271	49	0	0.0000
dgrover-gatk	SNP	tv	segdup	het	99.5280	99.7730	99.2842	92.5335	5275	12	5271	38	0	0.0000
dgrover-gatk	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.7443	5272	3	5272	0	0
rpoplin-dv42	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	21.4775	5272	3	5272	0	0
bgallagher-sentieon	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.6954	5272	3	5272	0	0
jli-custom	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.7443	5272	3	5272	0	0
jpowers-varprowl	SNP	ti	func_cds	homalt	99.9052	99.9431	99.8674	21.7810	5272	3	5272	7	7	100.0000
ghariani-varprowl	SNP	ti	func_cds	homalt	99.8769	99.9431	99.8107	21.2934	5272	3	5272	10	7	70.0000
gduggal-bwafb	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	21.6059	5272	3	5272	0	0
eyeh-varpipe	INDEL	I6_15	*	homalt	77.6886	84.0359	72.2329	34.4939	5243	996	5273	2027	2012	99.2600
ndellapenna-hhga	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.8377	5273	2	5273	0	0
ckim-dragen	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.1424	5273	2	5273	0	0
egarrison-hhga	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.9919	5273	2	5273	0	0
ltrigg-rtg1	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.7187	5273	2	5273	0	0
hfeng-pmm2	SNP	ti	func_cds	homalt	99.9905	99.9810	100.0000	20.6798	5274	1	5274	0	0
hfeng-pmm1	SNP	ti	func_cds	homalt	99.9905	99.9810	100.0000	20.7037	5274	1	5274	0	0
hfeng-pmm3	SNP	ti	func_cds	homalt	99.9905	99.9810	100.0000	20.5962	5274	1	5274	0	0
raldana-dualsentieon	SNP	ti	func_cds	homalt	99.9905	99.9810	100.0000	19.3825	5274	1	5274	0	0
gduggal-snapfb	SNP	ti	func_cds	homalt	99.9716	99.9810	99.9621	22.5825	5274	1	5274	2	1	50.0000
ckim-dragen	SNP	tv	segdup	het	97.4236	99.7730	95.1822	94.3912	5275	12	5275	267	0	0.0000
anovak-vg	SNP	ti	HG002compoundhet	homalt	82.5870	78.8207	86.7313	34.8753	5828	1566	5275	807	534	66.1710
ltrigg-rtg1	INDEL	I16_PLUS	*	*	90.7186	84.0050	98.5984	48.4241	5357	1020	5276	75	66	88.0000
cchapple-custom	SNP	tv	segdup	het	99.3783	99.7352	99.0240	94.2756	5273	14	5276	52	0	0.0000
qzeng-custom	INDEL	D6_15	HG002complexvar	*	93.7910	94.8133	92.7906	55.1605	5027	275	5277	410	156	38.0488
gduggal-snapplat	SNP	tv	map_l125_m2_e0	homalt	93.5527	87.9009	99.9811	71.5032	5289	728	5290	1	0	0.0000
qzeng-custom	INDEL	I16_PLUS	*	*	83.4199	82.9387	83.9068	61.2425	5289	1088	5292	1015	362	35.6650
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	83.0571	91.0366	76.3636	59.1295	5322	524	5292	1638	1616	98.6569
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	83.0571	91.0366	76.3636	59.1295	5322	524	5292	1638	1616	98.6569
ckim-vqsr	SNP	tv	map_l150_m1_e0	*	64.9686	48.5062	98.3460	91.7373	5293	5619	5292	89	0	0.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.5228	97.5359	99.5300	31.9212	5304	134	5294	25	25	100.0000
ciseli-custom	INDEL	*	map_siren	*	74.2881	71.4035	77.4156	83.7506	5291	2119	5296	1545	1017	65.8252
mlin-fermikit	INDEL	D6_15	*	hetalt	78.2531	64.4238	99.6427	35.0794	5266	2908	5298	19	18	94.7368
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.7118	87.9829	91.5099	73.1427	5352	731	5303	492	469	95.3252
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.4486	97.4071	99.5127	25.8925	5297	141	5309	26	25	96.1538
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9195	97.9163	99.9436	71.6321	5310	113	5314	3	3	100.0000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9195	97.9163	99.9436	71.6321	5310	113	5314	3	3	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	39.0121	35.9892	42.5893	55.2279	5321	9464	5316	7166	7112	99.2464
eyeh-varpipe	INDEL	D1_5	HG002compoundhet	hetalt	58.5449	41.7091	98.1717	64.4031	4261	5955	5316	99	95	95.9596
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.8394	89.3309	94.4928	61.1176	5434	649	5319	310	299	96.4516
gduggal-snapfb	INDEL	D6_15	*	homalt	84.4844	84.4926	84.4762	53.3817	5345	981	5322	978	974	99.5910
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	82.8275	71.3902	98.6286	59.1429	5320	2132	5322	74	14	18.9189

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