PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75501-75550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | het | 94.4053 | 97.9293 | 91.1260 | 92.3124 | 5155 | 109 | 5155 | 502 | 85 | 16.9323 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1342 | 96.9891 | 99.3066 | 64.2892 | 5154 | 160 | 5156 | 36 | 30 | 83.3333 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.3348 | 92.1922 | 81.1772 | 59.7644 | 5160 | 437 | 5158 | 1196 | 1175 | 98.2441 | |
| jmaeng-gatk | INDEL | D6_15 | HG002complexvar | * | 97.9225 | 97.3595 | 98.4921 | 58.5358 | 5162 | 140 | 5160 | 79 | 74 | 93.6709 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | het | 91.1258 | 98.0243 | 85.1345 | 94.1114 | 5160 | 104 | 5160 | 901 | 60 | 6.6593 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | het | 98.1365 | 98.0433 | 98.2299 | 88.1941 | 5161 | 103 | 5161 | 93 | 57 | 61.2903 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 76.5465 | 76.6078 | 76.4854 | 46.7535 | 5158 | 1575 | 5162 | 1587 | 1041 | 65.5955 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2600 | 94.9290 | 95.5934 | 73.1707 | 5148 | 275 | 5163 | 238 | 158 | 66.3866 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2600 | 94.9290 | 95.5934 | 73.1707 | 5148 | 275 | 5163 | 238 | 158 | 66.3866 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | * | 98.1282 | 97.3972 | 98.8702 | 56.5015 | 5164 | 138 | 5163 | 59 | 53 | 89.8305 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.2214 | 97.1584 | 99.3078 | 64.5805 | 5163 | 151 | 5165 | 36 | 29 | 80.5556 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | * | 69.2947 | 64.8053 | 74.4524 | 92.2088 | 5176 | 2811 | 5167 | 1773 | 350 | 19.7406 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | * | 98.0282 | 97.5292 | 98.5322 | 58.5722 | 5171 | 131 | 5169 | 77 | 70 | 90.9091 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | * | 97.9831 | 97.6047 | 98.3644 | 58.6538 | 5175 | 127 | 5172 | 86 | 83 | 96.5116 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | het | 98.5612 | 98.2523 | 98.8721 | 88.8393 | 5172 | 92 | 5172 | 59 | 11 | 18.6441 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3694 | 95.3108 | 99.5190 | 31.4561 | 5183 | 255 | 5172 | 25 | 25 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1701 | 95.0166 | 99.4235 | 24.0070 | 5167 | 271 | 5174 | 30 | 29 | 96.6667 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | het | 98.1329 | 98.3473 | 97.9194 | 91.5436 | 5177 | 87 | 5177 | 110 | 25 | 22.7273 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | * | 98.1151 | 97.6990 | 98.5347 | 58.5306 | 5180 | 122 | 5178 | 77 | 70 | 90.9091 | |
| eyeh-varpipe | SNP | tv | segdup | het | 95.3870 | 99.8298 | 91.3228 | 92.1659 | 5278 | 9 | 5178 | 492 | 4 | 0.8130 | |
| gduggal-bwaplat | SNP | tv | segdup | het | 98.3560 | 97.8438 | 98.8736 | 96.0991 | 5173 | 114 | 5179 | 59 | 6 | 10.1695 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.6384 | 95.7207 | 99.6345 | 39.6588 | 1275 | 57 | 5180 | 19 | 17 | 89.4737 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 91.7145 | 87.1038 | 96.8405 | 38.5031 | 5167 | 765 | 5180 | 169 | 126 | 74.5562 | |
| bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | * | 98.0701 | 97.7744 | 98.3675 | 58.4379 | 5184 | 118 | 5182 | 86 | 79 | 91.8605 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.5560 | 76.1304 | 97.6455 | 49.9717 | 5186 | 1626 | 5184 | 125 | 123 | 98.4000 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | het | 98.1822 | 98.4992 | 97.8671 | 90.6974 | 5185 | 79 | 5185 | 113 | 10 | 8.8496 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.9120 | 63.9658 | 99.6350 | 31.9608 | 5155 | 2904 | 5186 | 19 | 18 | 94.7368 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.9120 | 63.9658 | 99.6350 | 31.9608 | 5155 | 2904 | 5186 | 19 | 18 | 94.7368 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 75.1664 | 60.6286 | 98.8753 | 39.2261 | 5633 | 3658 | 5187 | 59 | 47 | 79.6610 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 75.1664 | 60.6286 | 98.8753 | 39.2261 | 5633 | 3658 | 5187 | 59 | 47 | 79.6610 | |
| qzeng-custom | SNP | tv | segdup | het | 97.9263 | 98.4679 | 97.3907 | 94.6360 | 5206 | 81 | 5188 | 139 | 6 | 4.3166 | |
| hfeng-pmm3 | SNP | * | map_l250_m2_e1 | het | 98.7819 | 98.5942 | 98.9703 | 89.1221 | 5190 | 74 | 5190 | 54 | 3 | 5.5556 | |
| eyeh-varpipe | INDEL | I1_5 | HG002compoundhet | hetalt | 60.8513 | 43.9832 | 98.7067 | 61.4827 | 4916 | 6261 | 5190 | 68 | 65 | 95.5882 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3592 | 95.2372 | 99.5780 | 26.4946 | 5179 | 259 | 5191 | 22 | 22 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.4004 | 63.2326 | 99.7503 | 28.0442 | 5168 | 3005 | 5193 | 13 | 13 | 100.0000 | |
| gduggal-bwavard | SNP | ti | HG002compoundhet | homalt | 90.8566 | 83.4190 | 99.7503 | 32.3766 | 6168 | 1226 | 5194 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 59.9212 | 54.8636 | 66.0058 | 31.4666 | 5189 | 4269 | 5194 | 2675 | 2487 | 92.9720 | |
| gduggal-snapplat | SNP | tv | segdup | het | 98.3319 | 98.0329 | 98.6327 | 95.7233 | 5183 | 104 | 5194 | 72 | 6 | 8.3333 | |
| astatham-gatk | INDEL | D6_15 | HG002complexvar | * | 98.3071 | 98.0385 | 98.5771 | 58.5385 | 5198 | 104 | 5196 | 75 | 68 | 90.6667 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | * | 98.2978 | 98.0385 | 98.5584 | 58.5437 | 5198 | 104 | 5196 | 76 | 69 | 90.7895 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0075 | 95.3292 | 98.7460 | 27.5468 | 5184 | 254 | 5197 | 66 | 64 | 96.9697 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6184 | 95.3476 | 100.0000 | 25.5017 | 5185 | 253 | 5197 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | homalt | 73.0094 | 57.4920 | 100.0000 | 72.7511 | 5199 | 3844 | 5198 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | het | 98.0666 | 98.7652 | 97.3778 | 90.6744 | 5199 | 65 | 5199 | 140 | 25 | 17.8571 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.7019 | 75.5446 | 96.3855 | 35.1952 | 5202 | 1684 | 5200 | 195 | 193 | 98.9744 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.8882 | 99.6873 | 58.6974 | 39.9145 | 5101 | 16 | 5200 | 3659 | 3622 | 98.9888 | |
| anovak-vg | INDEL | I6_15 | * | homalt | 61.4755 | 80.7661 | 49.6232 | 33.6435 | 5039 | 1200 | 5202 | 5281 | 4685 | 88.7143 | |
| anovak-vg | SNP | ti | func_cds | homalt | 99.1630 | 98.9384 | 99.3887 | 18.9378 | 5219 | 56 | 5203 | 32 | 30 | 93.7500 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5129 | 95.5131 | 99.5982 | 26.1932 | 5194 | 244 | 5206 | 21 | 21 | 100.0000 | |
| ckim-vqsr | SNP | tv | segdup | het | 98.9929 | 98.5625 | 99.4272 | 95.9257 | 5211 | 76 | 5207 | 30 | 0 | 0.0000 | |