PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75301-75350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | het | 93.5587 | 94.0919 | 93.0316 | 92.3350 | 4953 | 311 | 4953 | 371 | 90 | 24.2588 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | * | 61.2798 | 52.8513 | 72.9065 | 39.3574 | 4773 | 4258 | 4954 | 1841 | 1725 | 93.6991 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | het | 81.9515 | 96.3612 | 71.2908 | 92.3358 | 5005 | 189 | 4954 | 1995 | 92 | 4.6115 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.9877 | 74.1728 | 96.7962 | 69.7744 | 4954 | 1725 | 4955 | 164 | 54 | 32.9268 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | * | 99.0408 | 98.9617 | 99.1200 | 88.5996 | 4956 | 52 | 4956 | 44 | 10 | 22.7273 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.6118 | 96.7950 | 81.7043 | 50.5663 | 4953 | 164 | 4957 | 1110 | 1047 | 94.3243 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 74.6805 | 73.6967 | 75.6909 | 58.8837 | 4962 | 1771 | 4957 | 1592 | 1522 | 95.6030 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | * | 98.6664 | 98.9816 | 98.3532 | 89.5470 | 4957 | 51 | 4957 | 83 | 19 | 22.8916 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.4597 | 44.8804 | 97.4636 | 72.8689 | 2665 | 3273 | 4957 | 129 | 121 | 93.7984 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | * | 98.0431 | 97.7147 | 98.3737 | 89.9899 | 4960 | 116 | 4960 | 82 | 25 | 30.4878 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.3539 | 94.1988 | 96.5376 | 67.5442 | 4709 | 290 | 4963 | 178 | 155 | 87.0787 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.3539 | 94.1988 | 96.5376 | 67.5442 | 4709 | 290 | 4963 | 178 | 155 | 87.0787 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | homalt | 87.0129 | 84.8123 | 89.3307 | 67.3979 | 4970 | 890 | 4965 | 593 | 461 | 77.7403 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | * | 99.1712 | 99.1613 | 99.1811 | 88.8122 | 4966 | 42 | 4966 | 41 | 5 | 12.1951 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | * | 98.8259 | 99.1613 | 98.4927 | 89.9448 | 4966 | 42 | 4966 | 76 | 9 | 11.8421 | |
| ckim-dragen | SNP | ti | map_l250_m2_e1 | * | 97.3249 | 97.8132 | 96.8415 | 89.7690 | 4965 | 111 | 4967 | 162 | 20 | 12.3457 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | het | 98.2368 | 99.2937 | 97.2021 | 84.3948 | 5061 | 36 | 4968 | 143 | 4 | 2.7972 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | het | 94.2359 | 95.6873 | 92.8278 | 87.5230 | 4970 | 224 | 4970 | 384 | 172 | 44.7917 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | * | 97.7900 | 96.9257 | 98.6698 | 51.5393 | 5139 | 163 | 4970 | 67 | 50 | 74.6269 | |
| jli-custom | SNP | ti | map_l150_m0_e0 | het | 98.3675 | 97.5280 | 99.2216 | 76.7991 | 4971 | 126 | 4971 | 39 | 15 | 38.4615 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4844 | 97.4321 | 99.5596 | 48.5952 | 1328 | 35 | 4973 | 22 | 19 | 86.3636 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | * | 98.8083 | 98.0102 | 99.6195 | 88.7052 | 4975 | 101 | 4975 | 19 | 9 | 47.3684 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | het | 95.2059 | 95.7451 | 94.6728 | 91.6166 | 4973 | 221 | 4976 | 280 | 64 | 22.8571 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | * | 94.3407 | 98.0299 | 90.9191 | 92.8360 | 4976 | 100 | 4976 | 497 | 46 | 9.2555 | |
| mlin-fermikit | INDEL | I16_PLUS | * | * | 82.9403 | 77.8109 | 88.7937 | 66.6528 | 4962 | 1415 | 4976 | 628 | 607 | 96.6561 | |
| anovak-vg | SNP | * | map_l125_m0_e0 | homalt | 85.5602 | 75.1937 | 99.2421 | 70.8421 | 5047 | 1665 | 4976 | 38 | 33 | 86.8421 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 85.6750 | 96.3113 | 77.1544 | 58.1338 | 4282 | 164 | 4978 | 1474 | 1427 | 96.8114 | |
| gduggal-snapvard | INDEL | * | map_siren | het | 85.6604 | 93.9663 | 78.7036 | 86.4515 | 4236 | 272 | 4978 | 1347 | 630 | 46.7706 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | het | 97.5992 | 95.8799 | 99.3814 | 87.8462 | 4980 | 214 | 4980 | 31 | 14 | 45.1613 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e0 | * | 46.3923 | 30.2201 | 99.7997 | 92.3039 | 4983 | 11506 | 4982 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | homalt | 59.7639 | 42.6276 | 99.9398 | 85.5833 | 4987 | 6712 | 4983 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e1 | * | 98.5375 | 98.2270 | 98.8501 | 88.3448 | 4986 | 90 | 4986 | 58 | 38 | 65.5172 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | * | 99.0209 | 99.4484 | 98.5971 | 90.5779 | 5048 | 28 | 4990 | 71 | 6 | 8.4507 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | het | 98.0450 | 97.9007 | 98.1897 | 82.8404 | 4990 | 107 | 4990 | 92 | 34 | 36.9565 | |
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | het | 98.7730 | 97.9203 | 99.6406 | 81.1953 | 4991 | 106 | 4991 | 18 | 6 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | * | homalt | 87.6777 | 79.9968 | 96.9903 | 41.8473 | 4991 | 1248 | 4995 | 155 | 121 | 78.0645 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 51.3798 | 36.1160 | 88.9898 | 58.0399 | 4971 | 8793 | 4995 | 618 | 540 | 87.3786 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | * | 98.2211 | 98.4437 | 97.9996 | 88.4416 | 4997 | 79 | 4997 | 102 | 3 | 2.9412 | |
| ghariani-varprowl | SNP | ti | map_l150_m0_e0 | het | 96.0700 | 98.0773 | 94.1431 | 85.9691 | 4999 | 98 | 4999 | 311 | 79 | 25.4019 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | het | 97.9052 | 98.1362 | 97.6753 | 80.7049 | 5002 | 95 | 5000 | 119 | 1 | 0.8403 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | * | 98.6193 | 98.5028 | 98.7362 | 90.4249 | 5000 | 76 | 5000 | 64 | 18 | 28.1250 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | het | 96.9562 | 98.1165 | 95.8230 | 83.8541 | 5001 | 96 | 5001 | 218 | 18 | 8.2569 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.3581 | 44.8472 | 97.1096 | 76.3054 | 4169 | 5127 | 5006 | 149 | 142 | 95.3020 | |
| qzeng-custom | SNP | * | map_l250_m2_e0 | * | 75.7461 | 64.0330 | 92.7037 | 95.4455 | 5049 | 2836 | 5006 | 394 | 328 | 83.2487 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.7748 | 94.4594 | 87.3670 | 66.7807 | 4569 | 268 | 5007 | 724 | 345 | 47.6519 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | het | 98.4858 | 98.2735 | 98.6990 | 79.8611 | 5009 | 88 | 5007 | 66 | 44 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 49.4570 | 43.9271 | 56.5797 | 43.4855 | 4868 | 6214 | 5009 | 3844 | 2967 | 77.1852 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | * | 94.4339 | 93.4771 | 95.4104 | 92.6391 | 3511 | 245 | 5010 | 241 | 187 | 77.5934 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.6126 | 67.6959 | 69.5544 | 59.1226 | 3464 | 1653 | 5010 | 2193 | 1686 | 76.8810 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.6617 | 94.2604 | 99.1884 | 62.0692 | 5009 | 305 | 5011 | 41 | 34 | 82.9268 | |