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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
74301-74350 / 86044 show all
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.6545
99.3358
99.9752
49.3288
403827403811
100.0000
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
80.8933
68.5041
98.7531
57.3514
4039185740395149
96.0784
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
80.8933
68.5041
98.7531
57.3514
4039185740395149
96.0784
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
53.2015
46.3732
62.3880
36.5667
748865403924351935
79.4661
mlin-fermikitSNP*map_l150_m0_e0*
47.5288
33.5688
81.3658
64.0159
403979934039925818
88.4324
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0218
97.3951
98.6566
81.2038
403810840395532
58.1818
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8509
99.8255
99.8764
47.5826
40047403950
0.0000
cchapple-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6803
99.5094
99.8517
35.3111
405720403964
66.6667
gduggal-bwafbSNPtvmap_l150_m2_e0homalt
99.4097
98.9958
99.8271
75.2959
404241404275
71.4286
dgrover-gatkSNP*map_l150_m0_e0homalt
99.3242
98.8506
99.8025
74.1808
404247404286
75.0000
dgrover-gatkSNPtvmap_l150_m2_e0homalt
99.4343
99.0203
99.8518
71.6158
404340404364
66.6667
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.4487
74.1077
83.3299
46.2271
11423994044809800
98.8875
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
71.6485
93.5583
58.0534
81.2561
39652734044292258
1.9849
ltrigg-rtg1INDEL*HG002complexvarhetalt
94.3098
90.8354
98.0606
74.9985
336033940458079
98.7500
anovak-vgSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
98.0855
98.2042
97.9671
47.8546
39927340488436
42.8571
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7046
99.9754
99.4352
43.5229
406414049235
21.7391
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
65.9412
85.6091
53.6220
35.4284
4069684404935023279
93.6322
anovak-vgSNP*map_l250_m1_e0het
70.8783
85.8044
60.3757
91.8863
408067540502658592
22.2724
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.5939
99.2396
99.9506
44.1181
404631405021
50.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7906
99.6556
99.9260
49.2362
405114405131
33.3333
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8275
99.6556
100.0000
44.5296
405114405100
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5317
95.5639
99.5821
76.9923
40501884051170
0.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7906
99.6556
99.9260
45.0901
405114405131
33.3333
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7660
99.6556
99.8767
49.4516
405114405151
20.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7289
99.5326
99.9260
41.7636
404619405233
100.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7907
99.6802
99.9014
44.8913
405213405241
25.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8398
99.6802
100.0000
44.8107
405213405200
gduggal-snapfbSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.2893
99.6556
98.9258
48.4715
4051144052445
11.3636
ghariani-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
98.7332
99.6556
97.8277
50.1744
4051144053900
0.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6310
99.3377
99.9260
40.6323
405027405330
0.0000
ckim-dragenSNP*map_l150_m0_e0homalt
99.3015
99.0707
99.5334
70.2317
40513840531916
84.2105
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8153
99.7048
99.9260
44.7261
405312405332
66.6667
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8276
99.7048
99.9507
44.3071
405312405322
100.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2263
99.6260
98.8298
49.0498
3996154054480
0.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6632
95.6583
99.7539
76.8156
40541844054100
0.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6557
99.3868
99.9261
40.5247
405225405530
0.0000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8769
99.9262
99.8277
45.6225
40623405571
14.2857
ckim-isaacSNPtvmap_l150_m2_e0het
71.5812
55.9018
99.4848
80.5969
405431984055216
28.5714
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6680
99.4113
99.9261
41.1569
405324405630
0.0000
ndellapenna-hhgaSNP*map_l150_m0_e0homalt
99.5215
99.1930
99.8523
72.7346
405633405665
83.3333
ghariani-varprowlSNPtvmap_l150_m2_e1homalt
98.7101
98.1132
99.3144
75.8171
40567840562815
53.5714
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8769
99.7786
99.9754
44.9525
40569405611
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7907
99.6802
99.9015
41.5683
405213405743
75.0000
ltrigg-rtg2SNP*map_l150_m0_e0homalt
99.5584
99.2419
99.8769
71.8698
405831405754
80.0000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5475
95.7291
99.4363
77.3949
40571814057233
13.0435
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6927
99.4604
99.9261
41.2641
405522405830
0.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7419
99.8278
99.6562
49.2016
405874058140
0.0000
gduggal-bwafbSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7052
99.8278
99.5828
48.0230
405874058175
29.4118
jpowers-varprowlSNPtvmap_l150_m2_e1homalt
98.7711
98.1858
99.3635
77.7044
40597540592616
61.5385
raldana-dualsentieonSNP*map_l150_m0_e0homalt
99.5464
99.2908
99.8033
71.7833
406029406085
62.5000