PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74051-74100 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9380 | 99.2225 | 98.6552 | 35.2022 | 3956 | 31 | 3888 | 53 | 17 | 32.0755 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6923 | 99.5392 | 99.8459 | 28.7987 | 3888 | 18 | 3888 | 6 | 1 | 16.6667 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4291 | 98.7026 | 98.1570 | 66.1366 | 3880 | 51 | 3888 | 73 | 1 | 1.3699 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | homalt | 97.2621 | 95.2731 | 99.3359 | 82.3744 | 3890 | 193 | 3889 | 26 | 6 | 23.0769 | |
| astatham-gatk | SNP | * | map_l250_m1_e0 | het | 89.4949 | 81.7876 | 98.8059 | 91.8773 | 3889 | 866 | 3889 | 47 | 12 | 25.5319 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7436 | 99.6160 | 99.8716 | 27.5888 | 3891 | 15 | 3890 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8720 | 95.8799 | 99.9486 | 22.7273 | 3863 | 166 | 3891 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7565 | 99.6416 | 99.8717 | 29.3435 | 3892 | 14 | 3891 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7564 | 99.5904 | 99.9230 | 28.4060 | 3890 | 16 | 3891 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7949 | 99.6672 | 99.9230 | 28.5321 | 3893 | 13 | 3892 | 3 | 1 | 33.3333 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6416 | 99.4125 | 99.8717 | 75.1815 | 3892 | 23 | 3892 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7565 | 99.6672 | 99.8461 | 33.6736 | 3893 | 13 | 3892 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3619 | 99.0333 | 99.6927 | 53.9179 | 3893 | 38 | 3893 | 12 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6927 | 99.4381 | 99.9487 | 76.0337 | 3893 | 22 | 3893 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3744 | 99.5648 | 99.1847 | 37.2000 | 3889 | 17 | 3893 | 32 | 7 | 21.8750 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | homalt | 98.1354 | 96.6740 | 99.6417 | 77.0204 | 3953 | 136 | 3893 | 14 | 10 | 71.4286 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8206 | 99.6928 | 99.9487 | 29.2204 | 3894 | 12 | 3893 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4763 | 99.0588 | 99.8974 | 52.8829 | 3894 | 37 | 3894 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5146 | 99.0842 | 99.9487 | 54.1691 | 3895 | 36 | 3895 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7311 | 99.4891 | 99.9743 | 79.8583 | 3895 | 20 | 3895 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7823 | 99.7440 | 99.8206 | 33.3561 | 3896 | 10 | 3895 | 7 | 3 | 42.8571 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7439 | 99.7184 | 99.7695 | 31.0247 | 3895 | 11 | 3895 | 9 | 3 | 33.3333 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6961 | 99.6184 | 97.7906 | 64.7616 | 3916 | 15 | 3895 | 88 | 3 | 3.4091 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6292 | 99.7696 | 99.4893 | 34.4273 | 3897 | 9 | 3896 | 20 | 3 | 15.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5123 | 99.0294 | 100.0000 | 77.4811 | 3877 | 38 | 3896 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | homalt | 99.2485 | 98.7329 | 99.7695 | 71.6659 | 3896 | 50 | 3896 | 9 | 9 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7696 | 99.5402 | 100.0000 | 80.2993 | 3897 | 18 | 3897 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7569 | 99.5658 | 99.9487 | 80.8702 | 3898 | 17 | 3898 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7185 | 99.5147 | 99.9231 | 80.8305 | 3896 | 19 | 3898 | 3 | 1 | 33.3333 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | homalt | 99.2995 | 98.7836 | 99.8207 | 68.8894 | 3898 | 48 | 3898 | 7 | 5 | 71.4286 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7697 | 99.5913 | 99.9487 | 76.0057 | 3899 | 16 | 3899 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 52.9384 | 36.4654 | 96.5577 | 59.1585 | 3388 | 5903 | 3899 | 139 | 129 | 92.8058 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 52.9384 | 36.4654 | 96.5577 | 59.1585 | 3388 | 5903 | 3899 | 139 | 129 | 92.8058 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | homalt | 99.7710 | 99.7212 | 99.8208 | 74.4574 | 3935 | 11 | 3900 | 7 | 3 | 42.8571 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8976 | 99.8720 | 99.9231 | 28.9976 | 3901 | 5 | 3900 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7953 | 99.6169 | 99.9744 | 76.0807 | 3900 | 15 | 3900 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8720 | 99.8720 | 99.8720 | 30.2429 | 3901 | 5 | 3900 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | D6_15 | * | homalt | 74.3238 | 61.6345 | 93.5925 | 52.0152 | 3899 | 2427 | 3900 | 267 | 242 | 90.6367 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6463 | 99.5904 | 97.7199 | 44.7612 | 3890 | 16 | 3900 | 91 | 9 | 9.8901 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7825 | 99.6169 | 99.9487 | 75.9091 | 3900 | 15 | 3900 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.7147 | 97.4166 | 98.0146 | 32.9344 | 3884 | 103 | 3900 | 79 | 74 | 93.6709 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7826 | 99.6424 | 99.9232 | 75.5082 | 3901 | 14 | 3901 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.6308 | 99.6416 | 93.7966 | 43.2141 | 3892 | 14 | 3901 | 258 | 11 | 4.2636 | |
| ghariani-varprowl | INDEL | D6_15 | * | homalt | 74.2367 | 61.6503 | 93.2807 | 52.1893 | 3900 | 2426 | 3901 | 281 | 242 | 86.1210 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 37.9377 | 35.2193 | 41.1108 | 54.0150 | 3903 | 7179 | 3901 | 5588 | 5544 | 99.2126 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8081 | 99.6424 | 99.9744 | 76.1009 | 3901 | 14 | 3901 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8082 | 99.6679 | 99.9488 | 76.8939 | 3902 | 13 | 3902 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8465 | 99.9232 | 99.7699 | 29.4425 | 3903 | 3 | 3902 | 9 | 1 | 11.1111 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5662 | 99.2623 | 99.8720 | 56.6274 | 3902 | 29 | 3902 | 5 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9504 | 99.5147 | 90.7864 | 82.3867 | 3896 | 19 | 3902 | 396 | 320 | 80.8081 | |