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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
74001-74050 / 86044 show all
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.1579
94.9718
95.3448
39.6821
38722053871189179
94.7090
jpowers-varprowlSNPtvmap_l150_m1_e0homalt
98.7251
98.1247
99.3330
75.8368
38727438722616
61.5385
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4605
99.8195
99.1042
60.8242
387173872350
0.0000
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
87.0072
98.9272
77.6508
87.8604
3873423874111574
6.6368
gduggal-bwavardSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.7824
97.6925
99.8969
31.5687
389592387444
100.0000
jpowers-varprowlINDELD16_PLUS**
60.4248
56.9575
64.3415
68.1361
38642920387421472111
98.3232
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7425
99.6656
99.8196
59.9732
387413387476
85.7143
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7811
99.6656
99.8969
59.9463
387413387444
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8325
99.9226
99.7426
60.4661
387533875100
0.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9485
99.9228
99.9742
56.3906
38843387510
0.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8583
99.9226
99.7940
60.8923
38753387580
0.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.0428
95.6233
96.4659
70.2238
38891783876142124
87.3239
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8198
99.9742
99.6658
59.2542
387713877130
0.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8111
95.6479
98.0030
65.9757
389017738777963
79.7468
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8837
95.6479
98.1519
65.9512
389017738777364
87.6712
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4485
99.9742
98.9283
61.3587
387713877421
2.3810
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7941
99.9742
99.6146
59.9671
387713877150
0.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8455
99.9742
99.7171
60.4476
387713877110
0.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8841
99.7685
100.0000
57.9364
38789387700
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.3412
95.1435
95.5397
38.5245
38791983877181170
93.9227
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
98.9335
98.4611
99.4104
64.3027
3839603878237
30.4348
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9099
99.8199
100.0000
58.1282
38807387900
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8713
99.7942
99.9485
59.3783
38798387922
100.0000
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6158
95.9792
99.3093
24.9856
386716238822726
96.2963
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9228
99.9228
99.9228
59.2856
38843388432
66.6667
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3004
38843388422
100.0000
jlack-gatkSNPtvmap_l150_m1_e0homalt
99.0943
98.4288
99.7688
70.0054
388462388496
66.6667
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9228
100.0000
59.5375
38843388400
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3832
98.7739
100.0000
75.8608
386748388400
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8328
99.0038
96.6891
76.0765
38763938841332
1.5038
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
78.1733
64.2951
99.6920
43.7482
3904216838841210
83.3333
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
97.3244
99.6011
95.1494
59.1637
399516388419812
6.0606
gduggal-bwaplatSNPtvmap_l150_m1_e0het
71.5733
55.9315
99.3606
92.7084
388530613885255
20.0000
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.2455
99.2320
99.2591
40.7060
38763038852910
34.4828
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3479
98.8298
99.8715
53.0817
388546388550
0.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9743
99.9743
99.9743
59.5146
38861388611
100.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9743
99.9486
59.3220
38861388622
100.0000
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
97.1473
97.7063
96.5946
58.2763
391992388613715
10.9489
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1961
99.9228
98.4799
61.8721
3884338876046
76.6667
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
98.7801
99.9228
97.6633
61.6275
3884338879346
49.4624
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9871
100.0000
99.9743
59.4747
38870388711
100.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
59.8035
38870388700
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
98.8496
98.7433
98.9562
63.8705
38504938874114
34.1463
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8842
99.9226
99.8459
59.1543
38753388762
33.3333
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2827
98.9017
99.6667
74.9583
3872433887136
46.1538
cchapple-customSNP*map_l150_m0_e0homalt
97.4937
95.1333
99.9743
71.2925
3890199388811
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9743
99.9743
99.9743
59.5233
38861388811
100.0000