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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73751-73800 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.4934 | 99.1237 | 95.9157 | 59.7456 | 3733 | 33 | 3734 | 159 | 146 | 91.8239 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.4934 | 99.1237 | 95.9157 | 59.7456 | 3733 | 33 | 3734 | 159 | 146 | 91.8239 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2559 | 99.3087 | 99.2032 | 69.9329 | 3735 | 26 | 3735 | 30 | 29 | 96.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2559 | 99.3087 | 99.2032 | 69.9329 | 3735 | 26 | 3735 | 30 | 29 | 96.6667 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0587 | 99.3353 | 98.7837 | 71.2941 | 3736 | 25 | 3736 | 46 | 45 | 97.8261 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0587 | 99.3353 | 98.7837 | 71.2941 | 3736 | 25 | 3736 | 46 | 45 | 97.8261 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 76.5888 | 63.9069 | 95.5499 | 83.7077 | 3736 | 2110 | 3736 | 174 | 72 | 41.3793 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 76.5888 | 63.9069 | 95.5499 | 83.7077 | 3736 | 2110 | 3736 | 174 | 72 | 41.3793 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0984 | 99.3619 | 98.8363 | 71.4448 | 3737 | 24 | 3737 | 44 | 44 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0984 | 99.3619 | 98.8363 | 71.4448 | 3737 | 24 | 3737 | 44 | 44 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0590 | 99.3619 | 98.7579 | 70.3448 | 3737 | 24 | 3737 | 47 | 47 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0590 | 99.3619 | 98.7579 | 70.3448 | 3737 | 24 | 3737 | 47 | 47 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9281 | 99.3885 | 98.4721 | 71.1857 | 3738 | 23 | 3738 | 58 | 56 | 96.5517 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9281 | 99.3885 | 98.4721 | 71.1857 | 3738 | 23 | 3738 | 58 | 56 | 96.5517 | |
| jli-custom | INDEL | * | HG002compoundhet | het | 95.0677 | 97.0689 | 93.1473 | 77.2493 | 3974 | 120 | 3738 | 275 | 245 | 89.0909 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 73.7836 | 58.7520 | 99.1512 | 28.6930 | 4011 | 2816 | 3738 | 32 | 26 | 81.2500 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0855 | 99.3885 | 98.7844 | 71.5296 | 3738 | 23 | 3738 | 46 | 44 | 95.6522 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0855 | 99.3885 | 98.7844 | 71.5296 | 3738 | 23 | 3738 | 46 | 44 | 95.6522 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.2810 | 93.7940 | 96.8159 | 46.5107 | 2796 | 185 | 3740 | 123 | 114 | 92.6829 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2174 | 99.3885 | 99.0469 | 69.9044 | 3738 | 23 | 3741 | 36 | 34 | 94.4444 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2174 | 99.3885 | 99.0469 | 69.9044 | 3738 | 23 | 3741 | 36 | 34 | 94.4444 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 54.7235 | 48.0480 | 63.5530 | 34.9033 | 640 | 692 | 3742 | 2146 | 1725 | 80.3821 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.4763 | 93.5448 | 85.7470 | 50.2621 | 4159 | 287 | 3742 | 622 | 558 | 89.7106 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8170 | 92.7219 | 99.1258 | 58.3884 | 3771 | 296 | 3742 | 33 | 31 | 93.9394 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1261 | 99.3893 | 98.8642 | 54.0422 | 3743 | 23 | 3743 | 43 | 42 | 97.6744 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1261 | 99.3893 | 98.8642 | 54.0422 | 3743 | 23 | 3743 | 43 | 42 | 97.6744 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.0821 | 99.3893 | 94.8796 | 55.1755 | 3743 | 23 | 3743 | 202 | 199 | 98.5149 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.0821 | 99.3893 | 94.8796 | 55.1755 | 3743 | 23 | 3743 | 202 | 199 | 98.5149 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.6652 | 95.1622 | 96.1736 | 68.5790 | 1731 | 88 | 3745 | 149 | 130 | 87.2483 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.6652 | 95.1622 | 96.1736 | 68.5790 | 1731 | 88 | 3745 | 149 | 130 | 87.2483 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.2777 | 61.6727 | 99.9466 | 77.3753 | 3746 | 2328 | 3746 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 71.7034 | 76.5182 | 67.4586 | 62.2452 | 3402 | 1044 | 3748 | 1808 | 1171 | 64.7677 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | hetalt | 97.4347 | 95.2149 | 99.7604 | 68.3328 | 3522 | 177 | 3748 | 9 | 7 | 77.7778 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | hetalt | 97.5479 | 95.4312 | 99.7606 | 69.1784 | 3530 | 169 | 3750 | 9 | 7 | 77.7778 | |
| jlack-gatk | INDEL | * | HG002compoundhet | het | 87.1214 | 97.4108 | 78.7981 | 78.1044 | 3988 | 106 | 3750 | 1009 | 902 | 89.3954 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0230 | 99.5751 | 98.4769 | 55.3942 | 3750 | 16 | 3750 | 58 | 54 | 93.1034 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8130 | 98.1907 | 99.4431 | 58.6332 | 3799 | 70 | 3750 | 21 | 16 | 76.1905 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.3359 | 61.7386 | 99.9733 | 76.6438 | 3750 | 2324 | 3750 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.4416 | 88.7728 | 96.4267 | 49.8323 | 5266 | 666 | 3751 | 139 | 127 | 91.3669 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 79.0601 | 66.9823 | 96.4515 | 82.5174 | 3749 | 1848 | 3751 | 138 | 63 | 45.6522 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.5913 | 99.6283 | 91.8687 | 63.3516 | 3752 | 14 | 3751 | 332 | 329 | 99.0964 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.5913 | 99.6283 | 91.8687 | 63.3516 | 3752 | 14 | 3751 | 332 | 329 | 99.0964 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.3296 | 99.8474 | 91.2029 | 66.5610 | 3925 | 6 | 3753 | 362 | 12 | 3.3149 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0007 | 98.1907 | 97.8114 | 63.8674 | 3799 | 70 | 3754 | 84 | 80 | 95.2381 | |