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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
73601-73650 / 86044 show all
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.7674
99.6720
99.8630
53.6272
364612364551
20.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.7401
99.6720
99.8083
54.5545
364612364572
28.5714
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5630
99.4272
99.6991
49.6904
36452136451111
100.0000
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
73.1437
60.1120
93.3897
54.7163
365024223645258193
74.8062
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.2793
99.0236
99.5363
51.7187
36513636491715
88.2353
astatham-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.9904
93.0008
95.0013
54.6571
36542753649192181
94.2708
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
85.5129
76.5088
96.9190
34.7374
365111213649116114
98.2759
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.2927
98.9965
99.5907
51.8966
36503736501512
80.0000
bgallagher-sentieonINDEL*map_l100_m2_e0*
98.3285
98.6461
98.0129
85.9953
36435036507417
22.9730
ltrigg-rtg1INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.8332
90.8911
96.9721
73.4710
3672368365111438
33.3333
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
73.3622
60.1943
93.9043
54.3233
365524173651237195
82.2785
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3201
99.0507
99.5909
51.8830
36523536521512
80.0000
dgrover-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0434
93.0771
95.0299
54.7829
36572723652191179
93.7173
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.7204
98.1014
99.3473
45.8867
36177036532422
91.6667
ckim-dragenINDEL*map_l100_m2_e1*
97.0145
97.3908
96.6411
87.1665
365898365412720
15.7480
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.6470
95.4271
99.9726
29.9483
3631174365511
100.0000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3072
99.1321
99.4829
51.2667
36553236551916
84.2105
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
72.9905
59.8984
93.4066
85.0088
36552447365525842
16.2791
egarrison-hhgaINDEL*map_l100_m2_e1*
97.3869
97.1778
97.5968
97.6235
365010636559041
45.5556
egarrison-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.5105
95.6899
99.4017
30.5702
364116436552222
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3613
99.1592
99.5643
51.5120
36563136561613
81.2500
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3750
99.1863
99.5644
51.3896
36573036571613
81.2500
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9129
98.0590
99.7817
66.6211
368873365785
62.5000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9129
98.0590
99.7817
66.6211
368873365785
62.5000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7545
99.7818
99.7273
51.7500
3658836571010
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.3072
97.2880
99.3480
72.0840
365910236572422
91.6667
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.3072
97.2880
99.3480
72.0840
365910236572422
91.6667
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4527
93.8414
99.2135
55.2222
365724036582924
82.7586
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3774
93.8671
99.0257
55.4228
365823936593629
80.5556
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8636
99.8363
99.8908
48.6619
36606366044
100.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8228
99.8636
99.7820
48.9282
36615366188
100.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.7295
95.5848
99.9727
30.0745
3637168366111
100.0000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.6052
94.2754
99.0530
53.1678
365622236613517
48.5714
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8909
99.8909
99.8909
48.7917
36624366244
100.0000
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0957
93.3062
96.9553
51.5459
36662633662115107
93.0435
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8365
99.9182
99.7549
50.2169
36633366399
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9454
99.8909
51.3011
36642366444
100.0000
gduggal-snapfbSNPtvmap_l100_m0_e0homalt
97.1883
95.2678
99.1879
78.6252
36641823664306
20.0000
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0814
91.6918
96.5990
62.3710
36533313664129115
89.1473
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8910
99.9727
99.8094
51.1312
36651366577
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9727
99.8638
51.1578
36651366555
100.0000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8366
99.9727
99.7008
51.3048
3665136651111
100.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9318
99.9727
99.8910
51.2943
36651366544
100.0000
raldana-dualsentieonINDEL*map_l100_m2_e1*
97.9928
97.4175
98.5749
83.4180
36599736665313
24.5283
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
100.0000
99.8638
51.2807
36660366655
100.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8638
100.0000
99.7280
50.5648
3666036661010
100.0000
qzeng-customINDEL*map_l100_m1_e0*
83.9800
79.0296
89.5920
87.4621
2834752366742666
15.4930
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3724
94.0724
98.7877
56.0658
366623136674539
86.6667