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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
73201-73250 / 86044 show all
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5073
99.5362
99.4784
36.9220
3434163433185
27.7778
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
56.1615
41.5637
86.5642
60.9124
339747763434533458
85.9287
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7240
99.4783
99.9709
35.3959
343218343411
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.6953
99.4211
99.9709
62.6075
343520343511
100.0000
gduggal-snapfbINDEL*map_l100_m2_e1*
93.3057
90.9478
95.7892
85.0002
3416340343515140
26.4901
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
38.9448
36.3079
41.9946
48.7568
34346024343647464690
98.8201
jli-customINDEL*HG002complexvarhetalt
92.1678
86.8343
98.1995
67.3509
321248734366362
98.4127
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7534
99.6812
99.8257
39.7409
343911343662
33.3333
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6666
99.6812
99.6520
39.8884
3439113436122
16.6667
jmaeng-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.3401
86.1140
99.5366
37.1153
329353134371616
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.6954
99.4790
99.9128
62.0351
343718343733
100.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.9550
96.3415
99.6234
50.0434
339712934391312
92.3077
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.9550
96.3415
99.6234
50.0434
339712934391312
92.3077
ckim-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7825
99.7971
99.7680
39.6992
34437344082
25.0000
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6524
99.7101
99.5947
36.6587
3440103440142
14.2857
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7680
99.5658
99.9709
62.5612
344015344011
100.0000
raldana-dualsentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.1260
92.3762
93.8881
76.4157
37323083441224202
90.1786
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
83.5892
71.9405
99.7391
27.4753
34331339344199
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7825
99.5948
99.9709
63.5497
344114344111
100.0000
gduggal-bwavardINDEL*map_l100_m2_e0*
90.5115
93.0138
88.1404
88.0002
34352583441463191
41.2527
hfeng-pmm3SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7825
99.5948
99.9709
62.1467
344114344111
100.0000
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6813
99.7101
99.6525
34.1910
3440103441123
25.0000
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
92.5642
86.3306
99.7681
43.5629
3442545344288
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6381
99.7391
99.5373
34.1584
344193442163
18.7500
raldana-dualsentieonINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5900
96.6582
98.5399
68.6164
344211934425143
84.3137
jlack-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.3650
99.8551
98.8796
40.1582
344553442392
5.1282
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7101
99.5369
99.8839
62.7379
343916344244
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8116
99.6527
99.9710
62.5408
344312344311
100.0000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
92.2399
86.3055
99.0506
51.0836
344154634433314
42.4242
dgrover-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8260
99.6527
100.0000
62.8065
344312344300
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7972
99.8841
99.7104
37.7838
344643443102
20.0000
gduggal-bwavardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
54.1148
85.3960
39.6066
69.0608
3450590344352504800
91.4286
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7826
99.6527
99.9129
62.6693
344312344333
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6672
99.8841
99.4512
37.3053
344643443192
10.5263
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.9420
99.9130
99.9710
37.2906
34473344311
100.0000
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.0840
95.2463
98.9940
50.7712
332616634443532
91.4286
jli-customSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8261
99.6816
99.9710
63.0365
344411344410
0.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8261
99.6816
99.9710
63.3120
344411344411
100.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8406
99.7106
99.9710
62.7500
344510344511
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8406
99.7395
99.9420
62.2220
34469344622
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8696
99.7685
99.9710
64.2990
34478344711
100.0000
hfeng-pmm3INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.6249
86.3494
99.8841
40.2114
3302522344744
100.0000
ciseli-customINDEL*HG002compoundhet*
10.2161
9.0332
11.7555
64.4950
27062725034482588322293
86.1299
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50*
94.3491
99.6812
89.5584
44.0081
34391134484024
0.9950
hfeng-pmm2INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8162
96.8548
98.7969
68.2925
344911234494228
66.6667
hfeng-pmm2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.8555
92.3515
95.4093
77.3915
37313093450166128
77.1084
hfeng-pmm3INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1239
92.6980
95.5943
77.1597
37452953450159125
78.6164
gduggal-snapvardINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
55.8285
72.0960
45.5506
48.7100
1111430345041243618
87.7304
ndellapenna-hhgaINDELD6_15HG002compoundhethetalt
65.8129
49.3191
98.8822
29.8693
4020413134503930
76.9231
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5239
99.8551
99.1949
41.9366
344553450283
10.7143