PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72051-72100 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5366 | 99.3299 | 95.8069 | 62.8145 | 2668 | 18 | 2719 | 119 | 1 | 0.8403 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7987 | 99.5982 | 100.0000 | 27.0777 | 2727 | 11 | 2720 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6929 | 99.6061 | 99.7799 | 36.0694 | 2276 | 9 | 2720 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.9611 | 96.9686 | 82.1752 | 61.2865 | 2719 | 85 | 2720 | 590 | 583 | 98.8136 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | * | 94.2072 | 94.5177 | 93.8987 | 91.9751 | 2724 | 158 | 2724 | 177 | 36 | 20.3390 | |
| qzeng-custom | SNP | tv | map_l150_m1_e0 | homalt | 81.4702 | 69.3107 | 98.8039 | 71.2754 | 2735 | 1211 | 2726 | 33 | 33 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 67.4740 | 66.1145 | 68.8906 | 60.7168 | 2634 | 1350 | 2726 | 1231 | 537 | 43.6231 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7622 | 99.5982 | 99.9267 | 30.6657 | 2727 | 11 | 2727 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7805 | 99.6348 | 99.9267 | 31.1475 | 2728 | 10 | 2728 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.0109 | 74.4135 | 99.1279 | 56.8517 | 2728 | 938 | 2728 | 24 | 21 | 87.5000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7989 | 99.7078 | 99.8902 | 34.3036 | 2730 | 8 | 2728 | 3 | 1 | 33.3333 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7451 | 99.7462 | 99.7441 | 40.9924 | 2751 | 7 | 2728 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.6204 | 89.4628 | 82.0945 | 59.1015 | 866 | 102 | 2728 | 595 | 253 | 42.5210 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0268 | 98.8184 | 99.2361 | 41.7338 | 2258 | 27 | 2728 | 21 | 10 | 47.6190 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.5171 | 99.1298 | 94.0386 | 44.7974 | 2734 | 24 | 2729 | 173 | 47 | 27.1676 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4715 | 98.9485 | 100.0000 | 36.3424 | 2729 | 29 | 2729 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.9681 | 98.4772 | 97.4643 | 37.2197 | 2716 | 42 | 2729 | 71 | 52 | 73.2394 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3981 | 98.8035 | 100.0000 | 36.3869 | 2725 | 33 | 2729 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8903 | 99.8539 | 99.9268 | 27.2049 | 2734 | 4 | 2730 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8903 | 99.8539 | 99.9268 | 27.7249 | 2734 | 4 | 2730 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l150_m0_e0 | homalt | 99.3450 | 98.8772 | 99.8172 | 73.4053 | 2730 | 31 | 2730 | 5 | 4 | 80.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3611 | 99.6713 | 97.0850 | 34.4289 | 2729 | 9 | 2731 | 82 | 76 | 92.6829 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8537 | 99.7443 | 99.9634 | 30.7478 | 2731 | 7 | 2731 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 57.1106 | 50.0879 | 66.4235 | 43.0727 | 2563 | 2554 | 2732 | 1381 | 1057 | 76.5387 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8538 | 99.7443 | 99.9634 | 32.0149 | 2731 | 7 | 2732 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8538 | 99.7443 | 99.9634 | 29.9590 | 2731 | 7 | 2732 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6109 | 97.4679 | 99.7809 | 46.9392 | 2733 | 71 | 2733 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9025 | 98.1098 | 99.7081 | 39.8904 | 2751 | 53 | 2733 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8356 | 99.8174 | 99.8539 | 32.2109 | 2733 | 5 | 2734 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 71.6762 | 82.1328 | 63.5814 | 72.1033 | 1756 | 382 | 2734 | 1566 | 1053 | 67.2414 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.4305 | 22.6149 | 42.1263 | 81.2487 | 2278 | 7795 | 2734 | 3756 | 1082 | 28.8072 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.0045 | 99.8174 | 98.2047 | 40.5930 | 2733 | 5 | 2735 | 50 | 3 | 6.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 56.3564 | 39.9149 | 95.8304 | 60.8880 | 2719 | 4093 | 2735 | 119 | 102 | 85.7143 | |
| jpowers-varprowl | INDEL | I1_5 | map_siren | * | 92.9039 | 91.0815 | 94.8007 | 80.0152 | 2737 | 268 | 2735 | 150 | 120 | 80.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9087 | 99.8904 | 99.9269 | 30.4624 | 2735 | 3 | 2735 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9269 | 99.8904 | 99.9635 | 30.9962 | 2735 | 3 | 2735 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | homalt | 63.6417 | 46.6724 | 100.0000 | 80.2470 | 2735 | 3125 | 2735 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 32.6526 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l150_m0_e0 | homalt | 99.3100 | 99.0221 | 99.5996 | 68.7592 | 2734 | 27 | 2736 | 11 | 10 | 90.9091 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.8140 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.9710 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 32.1349 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.8140 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | * | 96.8015 | 93.9300 | 99.8540 | 79.7875 | 2739 | 177 | 2736 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | het | 95.8290 | 92.1159 | 99.8541 | 75.2192 | 2734 | 234 | 2737 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9635 | 99.9270 | 31.7808 | 2737 | 1 | 2737 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9635 | 99.9270 | 33.2602 | 2737 | 1 | 2737 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | homalt | 99.5276 | 99.2032 | 99.8541 | 71.1520 | 2739 | 22 | 2738 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | het | 83.5823 | 96.6936 | 73.6022 | 87.1311 | 2749 | 94 | 2738 | 982 | 41 | 4.1752 | |