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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71951-72000 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9791 | 99.2182 | 98.7412 | 58.5355 | 2665 | 21 | 2667 | 34 | 4 | 11.7647 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.4367 | 99.1065 | 92.0290 | 69.7242 | 2662 | 24 | 2667 | 231 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9828 | 97.6625 | 98.3051 | 30.8535 | 2674 | 64 | 2668 | 46 | 33 | 71.7391 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.4646 | 97.0242 | 97.9090 | 63.2516 | 1565 | 48 | 2669 | 57 | 50 | 87.7193 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | homalt | 98.9985 | 98.1972 | 99.8130 | 89.0383 | 2669 | 49 | 2669 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 35.1364 | 94.5160 | 21.5792 | 83.2603 | 2568 | 149 | 2670 | 9703 | 190 | 1.9582 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 43.4601 | 31.9182 | 68.0775 | 69.7400 | 2684 | 5725 | 2670 | 1252 | 1202 | 96.0064 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | * | 72.2354 | 72.6157 | 71.8590 | 84.0163 | 2604 | 982 | 2671 | 1046 | 628 | 60.0382 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | homalt | 99.6642 | 99.4415 | 99.8878 | 85.5934 | 2671 | 15 | 2671 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | * | 47.5699 | 33.4544 | 82.2913 | 80.2109 | 2672 | 5315 | 2672 | 575 | 501 | 87.1304 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0792 | 98.2071 | 95.9770 | 63.3202 | 2684 | 49 | 2672 | 112 | 106 | 94.6429 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.3982 | 98.2071 | 92.7456 | 62.2313 | 2684 | 49 | 2672 | 209 | 198 | 94.7368 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | homalt | 99.6459 | 99.5160 | 99.7760 | 87.2925 | 2673 | 13 | 2673 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 82.4573 | 73.9961 | 93.1034 | 68.3567 | 2635 | 926 | 2673 | 198 | 164 | 82.8283 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.5642 | 40.0198 | 96.4286 | 46.2791 | 2430 | 3642 | 2673 | 99 | 84 | 84.8485 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | homalt | 99.0554 | 98.3812 | 99.7389 | 86.6637 | 2674 | 44 | 2674 | 7 | 5 | 71.4286 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2393 | 99.5160 | 98.9641 | 59.7528 | 2673 | 13 | 2675 | 28 | 4 | 14.2857 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.3316 | 99.5905 | 99.0741 | 54.4458 | 2675 | 11 | 2675 | 25 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | map_l250_m2_e0 | homalt | 99.4794 | 99.5905 | 99.3685 | 87.8350 | 2675 | 11 | 2675 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | homalt | 99.4794 | 99.5905 | 99.3685 | 87.8799 | 2675 | 11 | 2675 | 17 | 6 | 35.2941 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.2776 | 67.1436 | 80.6452 | 54.3490 | 2675 | 1309 | 2675 | 642 | 605 | 94.2368 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | homalt | 99.4980 | 99.6277 | 99.3687 | 87.8966 | 2676 | 10 | 2676 | 17 | 6 | 35.2941 | |
| ghariani-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3468 | 96.9576 | 99.7764 | 75.9674 | 2677 | 84 | 2677 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3835 | 96.9938 | 99.8136 | 78.2964 | 2678 | 83 | 2678 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.8149 | 89.8021 | 98.2032 | 50.1554 | 2677 | 304 | 2678 | 49 | 47 | 95.9184 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6837 | 99.7394 | 99.6281 | 54.8750 | 2679 | 7 | 2679 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 91.9586 | 87.5042 | 96.8908 | 75.6471 | 5196 | 742 | 2680 | 86 | 85 | 98.8372 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.5242 | 99.6649 | 93.5754 | 71.7749 | 2677 | 9 | 2680 | 184 | 9 | 4.8913 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.0118 | 32.0942 | 81.2424 | 56.6189 | 2685 | 5681 | 2681 | 619 | 531 | 85.7835 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.5359 | 99.7766 | 99.2963 | 59.3496 | 2680 | 6 | 2681 | 19 | 1 | 5.2632 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5662 | 98.6750 | 98.4576 | 87.8962 | 2681 | 36 | 2681 | 42 | 24 | 57.1429 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.0457 | 84.6445 | 98.4943 | 38.8914 | 2679 | 486 | 2682 | 41 | 28 | 68.2927 | |
| ckim-vqsr | SNP | * | map_l150_m1_e0 | homalt | 38.4351 | 23.7914 | 99.9627 | 90.5070 | 2682 | 8591 | 2682 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.4584 | 97.6813 | 87.7658 | 87.3735 | 2654 | 63 | 2683 | 374 | 17 | 4.5455 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.5345 | 98.6462 | 98.4232 | 60.5868 | 2696 | 37 | 2684 | 43 | 41 | 95.3488 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 46.1155 | 32.1540 | 81.5062 | 55.9877 | 2690 | 5676 | 2684 | 609 | 538 | 88.3415 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.4644 | 67.6763 | 80.3352 | 54.3953 | 2659 | 1270 | 2684 | 657 | 598 | 91.0198 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.9555 | 67.4217 | 79.4788 | 54.5797 | 2649 | 1280 | 2684 | 693 | 618 | 89.1775 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.1693 | 98.8590 | 99.4815 | 88.1277 | 2686 | 31 | 2686 | 14 | 11 | 78.5714 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.3346 | 98.8595 | 99.8143 | 86.9517 | 2687 | 31 | 2687 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | tv | HG002compoundhet | homalt | 88.3010 | 79.3093 | 99.5923 | 36.8889 | 2687 | 701 | 2687 | 11 | 11 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l250_m2_e1 | het | 89.3914 | 81.4792 | 99.0055 | 92.4310 | 2688 | 611 | 2688 | 27 | 9 | 33.3333 | |
| ckim-dragen | SNP | * | map_l250_m2_e1 | homalt | 99.1340 | 98.9698 | 99.2986 | 84.0205 | 2690 | 28 | 2690 | 19 | 16 | 84.2105 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5546 | 98.8657 | 96.2777 | 63.5724 | 2702 | 31 | 2690 | 104 | 99 | 95.1923 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.9880 | 99.0063 | 98.9698 | 87.7821 | 2690 | 27 | 2690 | 28 | 12 | 42.8571 | |
| jli-custom | SNP | * | map_l250_m2_e1 | homalt | 99.3906 | 99.0066 | 99.7775 | 85.5799 | 2691 | 27 | 2691 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.1713 | 99.1535 | 99.1891 | 87.0415 | 2694 | 23 | 2691 | 22 | 15 | 68.1818 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e1 | homalt | 99.3355 | 99.0066 | 99.6667 | 86.2231 | 2691 | 27 | 2691 | 9 | 7 | 77.7778 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.2442 | 99.0799 | 99.4092 | 87.9842 | 2692 | 25 | 2692 | 16 | 14 | 87.5000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 79.6846 | 71.7362 | 89.6138 | 68.4553 | 2698 | 1063 | 2692 | 312 | 233 | 74.6795 | |