PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71351-71400 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | homalt | 70.0419 | 53.9078 | 99.9587 | 78.1072 | 2421 | 2070 | 2421 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.9982 | 98.2948 | 99.7117 | 85.6084 | 2421 | 42 | 2421 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9633 | 96.8927 | 97.0341 | 36.0748 | 2401 | 77 | 2421 | 74 | 41 | 55.4054 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.1110 | 97.3366 | 89.2370 | 37.3586 | 2412 | 66 | 2421 | 292 | 5 | 1.7123 | |
| ckim-isaac | INDEL | * | segdup | * | 96.6725 | 94.9531 | 98.4553 | 92.8290 | 2427 | 129 | 2422 | 38 | 23 | 60.5263 | |
| mlin-fermikit | INDEL | * | segdup | * | 95.7518 | 94.7966 | 96.7265 | 92.3178 | 2423 | 133 | 2423 | 82 | 67 | 81.7073 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5483 | 99.3850 | 99.7121 | 48.3425 | 2424 | 15 | 2424 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8231 | 97.4321 | 98.2172 | 67.5349 | 1328 | 35 | 2424 | 44 | 40 | 90.9091 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5689 | 99.4260 | 99.7122 | 48.3103 | 2425 | 14 | 2425 | 7 | 3 | 42.8571 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.5908 | 97.1532 | 68.8529 | 65.1322 | 2423 | 71 | 2425 | 1097 | 4 | 0.3646 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.5827 | 62.3493 | 84.0263 | 65.9228 | 2431 | 1468 | 2425 | 461 | 430 | 93.2755 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6302 | 99.4260 | 99.8353 | 48.5599 | 2425 | 14 | 2425 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7122 | 99.4260 | 100.0000 | 47.8270 | 2425 | 14 | 2425 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7328 | 99.4670 | 100.0000 | 48.0069 | 2426 | 13 | 2426 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8787 | 94.0922 | 99.8354 | 35.2518 | 2389 | 150 | 2426 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.9357 | 90.3933 | 99.9588 | 34.5998 | 2390 | 254 | 2426 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.4630 | 88.1350 | 92.9173 | 49.6530 | 2429 | 327 | 2427 | 185 | 180 | 97.2973 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3861 | 99.7540 | 99.0208 | 56.4034 | 2433 | 6 | 2427 | 24 | 3 | 12.5000 | |
| astatham-gatk | SNP | ti | map_l250_m1_e0 | het | 89.5242 | 81.7722 | 98.8998 | 92.0567 | 2427 | 541 | 2427 | 27 | 9 | 33.3333 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0012 | 99.6310 | 98.3793 | 56.8305 | 2430 | 9 | 2428 | 40 | 7 | 17.5000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | * | 80.3840 | 67.7078 | 98.9002 | 92.0959 | 2428 | 1158 | 2428 | 27 | 10 | 37.0370 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.3870 | 99.3850 | 93.5645 | 65.8553 | 2424 | 15 | 2428 | 167 | 12 | 7.1856 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.4421 | 98.3051 | 98.5795 | 46.6205 | 2436 | 42 | 2429 | 35 | 6 | 17.1429 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7842 | 98.0306 | 99.5494 | 36.1496 | 2240 | 45 | 2430 | 11 | 6 | 54.5455 | |
| gduggal-snapvard | INDEL | * | segdup | * | 85.3233 | 85.0548 | 85.5935 | 95.1733 | 2174 | 382 | 2430 | 409 | 309 | 75.5501 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8152 | 99.6720 | 99.9589 | 50.5792 | 2431 | 8 | 2431 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.9502 | 97.0480 | 96.8526 | 49.3747 | 2367 | 72 | 2431 | 79 | 39 | 49.3671 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | het | 83.6323 | 80.1110 | 87.4775 | 89.7782 | 1877 | 466 | 2431 | 348 | 54 | 15.5172 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.2653 | 98.7414 | 99.7948 | 85.6165 | 2432 | 31 | 2432 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_siren | homalt | 94.2088 | 91.6008 | 96.9697 | 74.6820 | 2432 | 223 | 2432 | 76 | 25 | 32.8947 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2102 | 88.3164 | 94.3001 | 47.2057 | 2434 | 322 | 2432 | 147 | 146 | 99.3197 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.1158 | 94.4808 | 84.3273 | 67.4932 | 2020 | 118 | 2432 | 452 | 436 | 96.4602 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 75.3471 | 93.5728 | 63.0638 | 89.0931 | 2475 | 170 | 2433 | 1425 | 52 | 3.6491 | |
| jpowers-varprowl | INDEL | * | map_siren | homalt | 94.9463 | 91.6384 | 98.5020 | 74.3563 | 2433 | 222 | 2433 | 37 | 25 | 67.5676 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0651 | 94.4072 | 99.8769 | 35.3752 | 2397 | 142 | 2434 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8769 | 99.7950 | 99.9589 | 49.0692 | 2434 | 5 | 2434 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7542 | 99.8360 | 99.6725 | 49.7429 | 2435 | 4 | 2435 | 8 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | map_siren | homalt | 95.6313 | 91.9397 | 99.6318 | 70.4973 | 2441 | 214 | 2435 | 9 | 6 | 66.6667 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | homalt | 34.4676 | 20.8223 | 100.0000 | 92.2232 | 2436 | 9263 | 2436 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 62.0536 | 50.9807 | 79.2711 | 51.4534 | 3223 | 3099 | 2436 | 637 | 614 | 96.3893 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 62.0536 | 50.9807 | 79.2711 | 51.4534 | 3223 | 3099 | 2436 | 637 | 614 | 96.3893 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.3847 | 99.0570 | 76.5871 | 59.4598 | 2416 | 23 | 2437 | 745 | 18 | 2.4161 | |
| jli-custom | SNP | * | map_l250_m1_e0 | homalt | 99.3477 | 98.9444 | 99.7544 | 84.2418 | 2437 | 26 | 2437 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8975 | 99.9180 | 99.8770 | 52.7132 | 2437 | 2 | 2437 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8361 | 99.8770 | 99.7952 | 51.6436 | 2436 | 3 | 2437 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | map_l250_m1_e0 | homalt | 99.2870 | 98.9444 | 99.6321 | 85.1090 | 2437 | 26 | 2437 | 9 | 7 | 77.7778 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | * | 75.2930 | 65.9626 | 87.6978 | 80.5947 | 2436 | 1257 | 2438 | 342 | 265 | 77.4854 | |
| ckim-dragen | SNP | * | map_l250_m1_e0 | homalt | 99.1258 | 98.9850 | 99.2671 | 82.5332 | 2438 | 25 | 2438 | 18 | 15 | 83.3333 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 51.7623 | 87.4465 | 36.7612 | 44.5578 | 2452 | 352 | 2438 | 4194 | 3961 | 94.4444 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2145 | 93.1450 | 95.3088 | 77.7623 | 2473 | 182 | 2438 | 120 | 91 | 75.8333 | |