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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
70801-70850 / 86044 show all
ltrigg-rtg1INDELD1_5map_sirenhet
97.9324
96.8819
99.0059
74.1048
2206712191221
4.5455
mlin-fermikitSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
98.8267
99.3639
98.2952
44.3446
21871421913838
100.0000
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5308
99.1852
92.1362
66.1398
2191182191187184
98.3957
dgrover-gatkINDEL*map_l125_m2_e1*
98.3157
98.2921
98.3393
89.1708
2187382191378
21.6216
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.5725
99.1852
92.2138
66.1587
2191182191185182
98.3784
mlin-fermikitSNPtvmap_l100_m0_e0homalt
61.5471
56.9943
66.8904
49.7701
21921654219210851011
93.1797
ndellapenna-hhgaINDEL*map_l100_m1_e0het
97.2839
97.4049
97.1631
83.0935
21775821926426
40.6250
ghariani-varprowlINDEL*map_l100_m1_e0het
90.5454
98.1655
84.0230
89.3321
2194412193417195
46.7626
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_triTR_11to50het
52.7157
43.0290
68.0310
66.2410
1574208421941031178
17.2648
jmaeng-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7953
99.6820
99.9089
42.1191
21947219422
100.0000
hfeng-pmm3INDEL*map_l125_m2_e1*
98.5832
98.4270
98.7399
86.2184
2190352194286
21.4286
gduggal-bwafbSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7273
99.6820
99.7726
43.0753
21947219454
80.0000
dgrover-gatkSNPtvmap_l125_m0_e0homalt
99.2760
98.7843
99.7726
69.4073
219427219453
60.0000
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8397
99.8160
99.8635
64.2706
21704219432
66.6667
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7953
99.6820
99.9089
42.1496
21947219422
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8863
99.9546
99.8181
38.5067
22001219542
50.0000
gduggal-snapfbSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5691
99.7274
99.4112
46.0147
219562195136
46.1538
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7726
99.6365
99.9090
41.7859
21938219521
50.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
88.0210
92.7552
83.7467
49.6639
25351982195426362
84.9765
ckim-gatkINDEL*map_l125_m2_e1*
96.6536
98.5169
94.8596
91.3812
219233219611911
9.2437
jli-customINDEL*map_l100_m1_e0het
98.3638
98.1208
98.6080
83.1747
2193422196319
29.0323
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
93.4068
87.9802
99.5467
30.4101
712297321961010
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.6307
91.1655
96.2330
58.6113
219821321978683
96.5116
gduggal-snapvardINDELD1_5map_l100_m1_e0*
88.9711
94.4264
84.1118
85.2613
17451032197415169
40.7229
hfeng-pmm2INDEL*map_l125_m2_e1*
98.2545
98.5618
97.9492
88.0799
2193322197467
15.2174
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7955
99.7728
99.8183
42.2613
21965219743
75.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.8637
100.0000
42.6858
21983219800
egarrison-hhgaINDEL*map_l100_m1_e0het
97.5114
97.9418
97.0848
83.6025
21894621986629
43.9394
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8183
99.8183
99.8183
42.3560
21974219843
75.0000
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.2234
91.3356
99.4570
29.5056
216120521981211
91.6667
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8864
99.8637
99.9091
41.9065
21983219822
100.0000
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
53.8464
67.1975
44.9213
37.7402
633309219826952403
89.1651
eyeh-varpipeSNPtvmap_l125_m0_e0homalt
99.6613
99.5948
99.7279
75.3135
22129219962
33.3333
asubramanian-gatkSNP*map_l150_m1_e0homalt
32.6455
19.5068
100.0000
91.9371
21999074219900
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.4084
21992219911
100.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.7232
21992219911
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.3026
21992219911
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8635
99.7274
100.0000
40.2446
21956219900
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8864
99.9091
99.8638
41.8076
21992219932
66.6667
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9457
22001220022
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8863
99.7728
100.0000
39.6930
21965220000
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8865
99.9091
99.8638
42.0263
21992220033
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.8384
22001220022
100.0000
gduggal-bwavardINDEL*map_l100_m1_e0het
89.9219
98.1208
82.9876
89.4070
2193422200451184
40.7982
asubramanian-gatkINDELD16_PLUSHG002compoundhet*
94.4206
93.9769
94.8685
35.6370
22001412200119109
91.5966
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9151
22001220022
100.0000
bgallagher-sentieonINDEL*map_l125_m2_e1*
98.3668
98.6966
98.0392
88.5574
2196292200449
20.4545
jmaeng-gatkINDEL*map_l100_m1_e0het
96.0483
98.2103
93.9795
90.0412
219540220114114
9.9291
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7733
99.9091
99.6378
40.5384
21992220184
50.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
100.0000
99.8639
41.8470
22010220133
100.0000