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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
70651-70700 / 86044 show all
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.3381
57.0859
98.7121
81.9630
2147161421462819
67.8571
gduggal-bwaplatSNP*map_l250_m2_e1het
57.7898
40.7295
99.4439
97.7262
214431202146123
25.0000
ndellapenna-hhgaINDEL*map_l125_m2_e0*
97.8100
97.5410
98.0804
98.3346
21425421464215
35.7143
ckim-dragenSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6745
99.8597
99.4900
40.5130
213532146114
36.3636
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
59.5457
53.6378
66.9161
58.0784
2020174621461061754
71.0650
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.5457
53.6378
66.9161
58.0784
2020174621461061754
71.0650
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.8799
77.9336
93.1858
52.6802
10562992147157154
98.0892
ckim-dragenINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7677
99.8606
99.6750
47.8198
21493214777
100.0000
rpoplin-dv42INDEL*map_l125_m2_e0*
98.0800
97.6321
98.5321
98.7156
21445221483213
40.6250
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.0022
90.7095
99.7214
86.4766
2148220214864
66.6667
jlack-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7214
99.8141
99.6289
46.6996
21484214887
87.5000
ltrigg-rtg2INDEL*map_l100_m1_e0het
97.4629
96.2864
98.6685
76.9451
2152832149292
6.8966
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.9647
99.8160
98.1279
69.9341
217042149411
2.4390
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1764
21502215022
100.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1619
21502215022
100.0000
gduggal-snapplatSNP*map_l250_m2_e1homalt
88.3005
79.1391
99.8607
89.4279
2151567215033
100.0000
egarrison-hhgaINDEL*map_l125_m2_e0*
98.0153
97.7687
98.2633
98.2577
21474921503814
36.8421
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
49.9555
43.2887
59.0497
58.0143
21642835215014911450
97.2502
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
49.9555
43.2887
59.0497
58.0143
21642835215014911450
97.2502
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.6633
97.6712
99.6756
43.8460
213951215176
85.7143
astatham-gatkINDEL*map_l100_m2_e0het
95.1270
93.0212
97.3303
87.5556
214616121515912
20.3390
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8839
99.9535
99.8144
47.5030
21511215144
100.0000
hfeng-pmm3INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.9574
97.3744
96.5440
64.7133
21515821517774
96.1039
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
99.9535
99.9071
44.5246
21511215122
100.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8839
99.9535
99.8144
47.5030
21511215144
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9535
99.8607
47.4506
21511215133
100.0000
jpowers-varprowlINDEL*map_l100_m2_e0het
91.6929
93.3247
90.1173
87.2972
21531542152236191
80.9322
ciseli-customINDEL*segdup*
85.0497
84.0767
86.0456
94.6455
21494072152349240
68.7679
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
100.0000
99.8608
45.9493
21520215233
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
100.0000
99.8145
47.5553
21520215244
100.0000
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8608
100.0000
99.7220
47.5832
21520215266
100.0000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
100.0000
99.8145
47.6826
21520215244
100.0000
jli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9303
100.0000
99.8608
46.0035
21520215233
100.0000
hfeng-pmm2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.5254
97.4649
95.6039
64.9385
21535621539992
92.9293
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4917
99.0340
99.9536
62.8172
215321215310
0.0000
ghariani-varprowlSNPtvmap_l125_m0_e0homalt
98.1984
96.9383
99.4917
74.3206
2153682153114
36.3636
ckim-dragenINDEL*map_l125_m2_e1*
96.5933
96.8989
96.2897
89.3425
21566921548314
16.8675
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.4705
97.6021
99.3545
52.3611
2198542155147
50.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.0365
90.9628
99.4922
86.4235
21542142155114
36.3636
hfeng-pmm1INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.9642
97.6007
96.3360
64.2948
21565321568277
93.9024
jpowers-varprowlSNPtvmap_l125_m0_e0homalt
98.2456
97.0734
99.4465
76.8128
2156652156125
41.6667
ciseli-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
85.3739
82.2047
88.7974
65.9324
21854732156272162
59.5588
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.8847
89.4650
98.7637
56.1710
215725421572725
92.5926
jlack-gatkINDELD16_PLUSHG002compoundhet*
92.8541
92.1401
93.5792
35.3980
21571842157148143
96.6216
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.3092
99.1720
99.4467
63.8078
2156182157125
41.6667
gduggal-snapplatINDELD1_5map_sirenhet
85.7607
82.4769
89.3168
89.6940
1878399215725842
16.2791
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.0639
91.0895
99.4009
86.9340
215721121571310
76.9231
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.4345
88.7599
98.6289
56.3012
214027121583018
60.0000
ltrigg-rtg2INDEL*map_l125_m2_e1*
97.7940
96.5393
99.0817
82.5509
2148772158201
5.0000
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
93.4119
88.3559
99.0817
66.5438
21552842158206
30.0000