PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70451-70500 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_l125_m1_e0 | * | 94.7690 | 98.2914 | 91.4903 | 90.0770 | 2071 | 36 | 2075 | 193 | 12 | 6.2176 | |
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | * | 98.3163 | 98.2914 | 98.3412 | 88.3670 | 2071 | 36 | 2075 | 35 | 8 | 22.8571 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.7662 | 69.4733 | 90.9290 | 52.5276 | 2071 | 910 | 2075 | 207 | 206 | 99.5169 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7592 | 96.2430 | 97.2808 | 87.7639 | 2075 | 81 | 2075 | 58 | 37 | 63.7931 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.6922 | 99.9080 | 91.8178 | 68.6059 | 2172 | 2 | 2076 | 185 | 3 | 1.6216 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.9790 | 96.7259 | 82.3810 | 40.2277 | 2068 | 70 | 2076 | 444 | 4 | 0.9009 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7486 | 93.7443 | 99.9519 | 34.1888 | 2053 | 137 | 2076 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.0351 | 96.4286 | 97.6493 | 76.4347 | 2079 | 77 | 2077 | 50 | 29 | 58.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7729 | 93.7900 | 99.9519 | 33.6738 | 2054 | 136 | 2077 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9853 | 94.2753 | 99.8558 | 44.2957 | 2075 | 126 | 2077 | 3 | 1 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5833 | 96.4750 | 98.7173 | 74.8085 | 2080 | 76 | 2078 | 27 | 9 | 33.3333 | |
| raldana-dualsentieon | SNP | * | map_l250_m0_e0 | * | 97.3302 | 97.3302 | 97.3302 | 91.9586 | 2078 | 57 | 2078 | 57 | 3 | 5.2632 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7765 | 93.8813 | 99.8559 | 30.0168 | 2056 | 134 | 2079 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7765 | 93.8813 | 99.8559 | 30.0168 | 2056 | 134 | 2079 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_siren | het | 86.2774 | 89.9868 | 82.8617 | 80.2332 | 2049 | 228 | 2079 | 430 | 142 | 33.0233 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | * | 98.6235 | 98.5287 | 98.7186 | 85.1274 | 2076 | 31 | 2080 | 27 | 6 | 22.2222 | |
| jpowers-varprowl | INDEL | I16_PLUS | * | het | 66.0542 | 76.3061 | 58.2307 | 60.8634 | 2074 | 644 | 2080 | 1492 | 1486 | 99.5979 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | * | 96.6080 | 98.5287 | 94.7608 | 90.7066 | 2076 | 31 | 2080 | 115 | 11 | 9.5652 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 72.9780 | 57.9977 | 98.3917 | 46.7104 | 2045 | 1481 | 2080 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 72.9780 | 57.9977 | 98.3917 | 46.7104 | 2045 | 1481 | 2080 | 34 | 34 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l250_m2_e0 | het | 74.6630 | 63.8291 | 89.9265 | 96.4842 | 2077 | 1177 | 2080 | 233 | 195 | 83.6910 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | * | 98.2517 | 98.5762 | 97.9294 | 87.1694 | 2077 | 30 | 2081 | 44 | 7 | 15.9091 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0619 | 97.7461 | 96.3872 | 69.9220 | 2125 | 49 | 2081 | 78 | 11 | 14.1026 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4267 | 96.6141 | 98.2531 | 76.5682 | 2083 | 73 | 2081 | 37 | 19 | 51.3514 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5637 | 96.6141 | 98.5322 | 74.8332 | 2083 | 73 | 2081 | 31 | 8 | 25.8065 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | homalt | 96.2107 | 93.7416 | 98.8135 | 84.7573 | 2082 | 139 | 2082 | 25 | 6 | 24.0000 | |
| dgrover-gatk | SNP | * | map_l250_m0_e0 | * | 97.6090 | 97.5176 | 97.7006 | 93.8613 | 2082 | 53 | 2082 | 49 | 10 | 20.4082 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 42.0732 | 33.1541 | 57.5573 | 69.3357 | 2096 | 4226 | 2083 | 1536 | 1445 | 94.0755 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 42.0732 | 33.1541 | 57.5573 | 69.3357 | 2096 | 4226 | 2083 | 1536 | 1445 | 94.0755 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | * | 98.3703 | 98.7186 | 98.0245 | 87.6918 | 2080 | 27 | 2084 | 42 | 9 | 21.4286 | |
| astatham-gatk | INDEL | * | map_l100_m1_e0 | het | 95.1305 | 93.0201 | 97.3389 | 86.8492 | 2079 | 156 | 2085 | 57 | 11 | 19.2982 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3271 | 94.3866 | 98.3491 | 65.6458 | 2085 | 124 | 2085 | 35 | 29 | 82.8571 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2935 | 94.7297 | 100.0000 | 44.7856 | 2085 | 116 | 2086 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 84.1988 | 94.4771 | 75.9374 | 66.3688 | 2087 | 122 | 2086 | 661 | 626 | 94.7050 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6846 | 96.8924 | 98.4899 | 76.8920 | 2089 | 67 | 2087 | 32 | 20 | 62.5000 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | het | 91.6772 | 93.4228 | 89.9957 | 86.5713 | 2088 | 147 | 2087 | 232 | 188 | 81.0345 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.0644 | 85.9330 | 96.8475 | 84.2543 | 2077 | 340 | 2089 | 68 | 28 | 41.1765 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | * | 94.4490 | 93.5281 | 95.3881 | 87.4419 | 2081 | 144 | 2089 | 101 | 24 | 23.7624 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.5771 | 86.4295 | 99.6662 | 81.9053 | 2089 | 328 | 2090 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | * | 91.5832 | 95.0364 | 88.3721 | 90.1236 | 2087 | 109 | 2090 | 275 | 74 | 26.9091 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8514 | 86.7287 | 99.9044 | 30.7514 | 2052 | 314 | 2090 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 79.5334 | 83.2452 | 76.1384 | 70.7854 | 2047 | 412 | 2090 | 655 | 364 | 55.5725 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7158 | 97.4490 | 97.9841 | 76.9231 | 2101 | 55 | 2090 | 43 | 21 | 48.8372 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | * | 82.8587 | 74.2259 | 93.7640 | 91.6841 | 1630 | 566 | 2090 | 139 | 47 | 33.8129 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.2939 | 84.4229 | 99.3824 | 53.3363 | 2092 | 386 | 2092 | 13 | 1 | 7.6923 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3346 | 95.0228 | 99.7616 | 43.5987 | 2081 | 109 | 2092 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0913 | 94.4749 | 99.8568 | 32.8741 | 2069 | 121 | 2092 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6681 | 97.1707 | 98.1707 | 76.7832 | 2095 | 61 | 2093 | 39 | 20 | 51.2821 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | * | 96.5138 | 95.1275 | 97.9410 | 89.1008 | 2089 | 107 | 2093 | 44 | 9 | 20.4545 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6259 | 94.6129 | 98.7264 | 59.9168 | 2090 | 119 | 2093 | 27 | 24 | 88.8889 | |