PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69751-69800 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | homalt | 95.0121 | 96.0880 | 93.9601 | 84.1663 | 1179 | 48 | 1789 | 115 | 103 | 89.5652 | |
| anovak-vg | INDEL | I1_5 | map_siren | * | 58.1927 | 58.9351 | 57.4687 | 78.9889 | 1771 | 1234 | 1789 | 1324 | 1029 | 77.7190 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.1106 | 96.9697 | 99.2786 | 76.3393 | 1792 | 56 | 1789 | 13 | 1 | 7.6923 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0884 | 99.7815 | 90.8168 | 71.4761 | 1827 | 4 | 1790 | 181 | 4 | 2.2099 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6299 | 97.0238 | 98.2437 | 83.5797 | 1793 | 55 | 1790 | 32 | 6 | 18.7500 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.6648 | 97.6879 | 93.7238 | 36.7934 | 1690 | 40 | 1792 | 120 | 21 | 17.5000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | het | 95.4049 | 91.3995 | 99.7774 | 74.6007 | 1796 | 169 | 1793 | 4 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | map_l100_m0_e0 | homalt | 63.5928 | 46.6199 | 100.0000 | 57.1053 | 1793 | 2053 | 1793 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e1 | * | 93.6537 | 92.4703 | 94.8677 | 84.4955 | 1793 | 146 | 1793 | 97 | 64 | 65.9794 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | het | 83.6174 | 95.9551 | 74.0909 | 89.7946 | 1281 | 54 | 1793 | 627 | 240 | 38.2775 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | * | 85.0852 | 92.2863 | 78.9265 | 90.9345 | 1328 | 111 | 1794 | 479 | 153 | 31.9415 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | * | 97.3132 | 96.9697 | 97.6592 | 88.1476 | 1792 | 56 | 1794 | 43 | 6 | 13.9535 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | het | 79.4811 | 73.6018 | 86.3811 | 92.1058 | 1645 | 590 | 1795 | 283 | 31 | 10.9541 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7182 | 95.3340 | 98.1431 | 70.1548 | 1798 | 88 | 1797 | 34 | 22 | 64.7059 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6365 | 97.2403 | 98.0360 | 81.9551 | 1797 | 51 | 1797 | 36 | 17 | 47.2222 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.2638 | 96.1738 | 96.3539 | 73.1963 | 1483 | 59 | 1797 | 68 | 52 | 76.4706 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.4335 | 83.8126 | 93.5937 | 65.9030 | 1807 | 349 | 1797 | 123 | 60 | 48.7805 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0083 | 98.1431 | 99.8888 | 50.8470 | 1797 | 34 | 1797 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | * | 90.7740 | 93.4211 | 88.2728 | 86.1304 | 1278 | 90 | 1799 | 239 | 111 | 46.4435 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | * | 85.3151 | 80.0413 | 91.3330 | 91.1809 | 1552 | 387 | 1802 | 171 | 33 | 19.2982 | |
| gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.5589 | 88.9822 | 78.7587 | 90.6848 | 1801 | 223 | 1802 | 486 | 14 | 2.8807 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.6150 | 69.6868 | 98.4699 | 49.2653 | 1869 | 813 | 1802 | 28 | 24 | 85.7143 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 61.5928 | 47.2536 | 88.4257 | 46.3421 | 1798 | 2007 | 1803 | 236 | 207 | 87.7119 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0937 | 98.5254 | 99.6685 | 47.3225 | 1804 | 27 | 1804 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0398 | 98.5800 | 99.5039 | 51.7553 | 1805 | 26 | 1805 | 9 | 1 | 11.1111 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.7870 | 50.7723 | 64.4183 | 57.0048 | 1808 | 1753 | 1805 | 997 | 979 | 98.1946 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 82.7487 | 71.4392 | 98.3125 | 49.4079 | 1916 | 766 | 1806 | 31 | 20 | 64.5161 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7046 | 95.7031 | 97.7273 | 60.0519 | 1715 | 77 | 1806 | 42 | 37 | 88.0952 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | * | 89.3838 | 84.2744 | 95.1528 | 48.3959 | 1806 | 337 | 1806 | 92 | 90 | 97.8261 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9589 | 98.6346 | 99.2853 | 46.9834 | 1806 | 25 | 1806 | 13 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | * | 92.7581 | 94.9974 | 90.6219 | 86.9648 | 1842 | 97 | 1807 | 187 | 51 | 27.2727 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1767 | 98.6892 | 99.6691 | 48.1704 | 1807 | 24 | 1807 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.4990 | 97.6190 | 99.3949 | 80.5561 | 1804 | 44 | 1807 | 11 | 1 | 9.0909 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | * | 97.5455 | 97.9437 | 97.1505 | 85.1212 | 1810 | 38 | 1807 | 53 | 6 | 11.3208 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0820 | 92.6941 | 95.5121 | 71.6510 | 1827 | 144 | 1809 | 85 | 58 | 68.2353 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0820 | 92.6941 | 95.5121 | 71.6510 | 1827 | 144 | 1809 | 85 | 58 | 68.2353 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.6293 | 78.9187 | 88.9381 | 47.0175 | 3766 | 1006 | 1809 | 225 | 103 | 45.7778 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.4344 | 74.8652 | 80.1862 | 50.9245 | 1805 | 606 | 1809 | 447 | 421 | 94.1834 | |
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | * | 60.1129 | 43.3637 | 97.9437 | 94.7907 | 1810 | 2364 | 1810 | 38 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.7383 | 75.0311 | 78.5249 | 51.9191 | 1809 | 602 | 1810 | 495 | 467 | 94.3434 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | * | 98.0764 | 97.9437 | 98.2094 | 82.9273 | 1810 | 38 | 1810 | 33 | 12 | 36.3636 | |
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | homalt | 39.6323 | 24.7168 | 99.9448 | 90.0193 | 1811 | 5516 | 1811 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | * | 91.5803 | 94.5692 | 88.7745 | 87.1803 | 1811 | 104 | 1811 | 229 | 65 | 28.3843 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | het | 96.4634 | 93.5052 | 99.6150 | 78.6168 | 1814 | 126 | 1811 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2061 | 98.9623 | 99.4512 | 52.1534 | 1812 | 19 | 1812 | 10 | 1 | 10.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.3693 | 98.9623 | 99.7797 | 53.9086 | 1812 | 19 | 1812 | 4 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0578 | 96.0317 | 98.1061 | 87.2243 | 1694 | 70 | 1813 | 35 | 22 | 62.8571 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.0437 | 97.4877 | 78.6210 | 66.4142 | 1785 | 46 | 1813 | 493 | 9 | 1.8256 | |