PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69001-69050 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5632 | 99.4406 | 99.6861 | 52.5328 | 1600 | 9 | 1588 | 5 | 3 | 60.0000 | |
| ckim-dragen | SNP | ti | map_l250_m1_e0 | homalt | 99.1261 | 98.8177 | 99.4364 | 82.0944 | 1588 | 19 | 1588 | 9 | 8 | 88.8889 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | * | 97.6146 | 97.6263 | 97.6030 | 66.9174 | 1604 | 39 | 1588 | 39 | 28 | 71.7949 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002complexvar | * | 97.6446 | 97.6263 | 97.6630 | 66.8096 | 1604 | 39 | 1588 | 38 | 27 | 71.0526 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.3125 | 98.8799 | 99.7489 | 85.0633 | 1589 | 18 | 1589 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m2_e0 | het | 85.9616 | 81.9072 | 90.4382 | 95.1114 | 1589 | 351 | 1589 | 168 | 70 | 41.6667 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.4414 | 79.6287 | 92.1694 | 54.6077 | 1673 | 428 | 1589 | 135 | 130 | 96.2963 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | het | 72.9400 | 70.5593 | 75.4869 | 88.5098 | 1577 | 658 | 1589 | 516 | 305 | 59.1085 | |
| jli-custom | SNP | ti | map_l250_m1_e0 | homalt | 99.3746 | 98.8799 | 99.8743 | 84.2895 | 1589 | 18 | 1589 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | het | 97.6073 | 96.1333 | 99.1272 | 75.0467 | 1616 | 65 | 1590 | 14 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 79.0223 | 86.0771 | 73.0363 | 71.1846 | 915 | 148 | 1590 | 587 | 460 | 78.3646 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0673 | 90.9611 | 99.5617 | 70.9107 | 1590 | 158 | 1590 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | * | 55.0840 | 38.0930 | 99.4371 | 95.3509 | 1590 | 2584 | 1590 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.2212 | 85.5653 | 100.0000 | 31.5699 | 1559 | 263 | 1591 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.4375 | 99.0044 | 99.8745 | 84.1493 | 1591 | 16 | 1591 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2824 | 98.8813 | 99.6867 | 44.4483 | 1591 | 18 | 1591 | 5 | 1 | 20.0000 | |
| ckim-gatk | SNP | tv | map_l250_m2_e1 | * | 69.6890 | 54.5610 | 96.4242 | 96.4387 | 1591 | 1325 | 1591 | 59 | 1 | 1.6949 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0605 | 98.2598 | 99.8745 | 43.2288 | 1581 | 28 | 1591 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 76.4099 | 73.8404 | 79.1646 | 73.0862 | 1592 | 564 | 1592 | 419 | 404 | 96.4200 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | homalt | 97.3031 | 94.9173 | 99.8119 | 53.8350 | 1606 | 86 | 1592 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.7546 | 84.9330 | 92.9364 | 52.1776 | 1522 | 270 | 1592 | 121 | 119 | 98.3471 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.3449 | 94.3042 | 90.4654 | 62.2051 | 1606 | 97 | 1594 | 168 | 164 | 97.6190 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | homalt | 99.5006 | 99.1910 | 99.8121 | 86.3830 | 1594 | 13 | 1594 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.0368 | 92.4855 | 97.7328 | 30.1370 | 1600 | 130 | 1595 | 37 | 31 | 83.7838 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4692 | 99.8734 | 99.0683 | 51.6226 | 1578 | 2 | 1595 | 15 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | homalt | 92.1150 | 94.2080 | 90.1130 | 60.6404 | 1594 | 98 | 1595 | 175 | 104 | 59.4286 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | het | 87.6928 | 97.6911 | 79.5511 | 87.5070 | 1227 | 29 | 1595 | 410 | 161 | 39.2683 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | * | 65.7644 | 60.3702 | 72.2172 | 91.9134 | 1598 | 1049 | 1596 | 614 | 128 | 20.8469 | |
| qzeng-custom | SNP | * | map_l250_m2_e0 | homalt | 74.7183 | 60.0894 | 98.7624 | 89.3086 | 1614 | 1072 | 1596 | 20 | 19 | 95.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 77.1176 | 83.8177 | 71.4094 | 81.9321 | 1269 | 245 | 1596 | 639 | 277 | 43.3490 | |
| astatham-gatk | SNP | tv | map_l250_m2_e1 | het | 89.1681 | 81.2723 | 98.7631 | 92.1160 | 1597 | 368 | 1597 | 20 | 3 | 15.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0678 | 96.6163 | 99.5636 | 56.9165 | 1599 | 56 | 1597 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5326 | 100.0000 | 99.0695 | 50.6581 | 1580 | 0 | 1597 | 15 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2661 | 86.8078 | 96.2071 | 67.4824 | 1599 | 243 | 1598 | 63 | 54 | 85.7143 | |
| egarrison-hhga | INDEL | D16_PLUS | * | homalt | 94.6666 | 94.3853 | 94.9495 | 59.9952 | 1597 | 95 | 1598 | 85 | 63 | 74.1176 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | homalt | 99.6259 | 99.4400 | 99.8126 | 84.3683 | 1598 | 9 | 1598 | 3 | 3 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8135 | 100.0000 | 43.8707 | 1606 | 3 | 1598 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1292 | 96.6767 | 99.6259 | 57.5998 | 1600 | 55 | 1598 | 6 | 4 | 66.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4122 | 85.8946 | 100.0000 | 32.3455 | 1565 | 257 | 1598 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | homalt | 99.4712 | 99.5022 | 99.4403 | 86.8852 | 1599 | 8 | 1599 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | homalt | 99.6262 | 99.5022 | 99.7505 | 86.3540 | 1599 | 8 | 1599 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2924 | 99.3785 | 95.2920 | 69.4798 | 1599 | 10 | 1599 | 79 | 4 | 5.0633 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | homalt | 99.5025 | 99.5644 | 99.4406 | 86.8749 | 1600 | 7 | 1600 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | homalt | 99.5025 | 99.5644 | 99.4406 | 86.8266 | 1600 | 7 | 1600 | 9 | 2 | 22.2222 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6885 | 99.4406 | 99.9375 | 43.4875 | 1600 | 9 | 1600 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 51.3330 | 45.2682 | 59.2743 | 64.1063 | 1612 | 1949 | 1601 | 1100 | 1012 | 92.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7199 | 99.5649 | 99.8753 | 57.4423 | 1602 | 7 | 1602 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | homalt | 95.4735 | 91.6524 | 99.6271 | 92.3917 | 1603 | 146 | 1603 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3153 | 96.9789 | 99.6891 | 57.4040 | 1605 | 50 | 1603 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | * | 86.2026 | 93.2441 | 80.1500 | 61.6049 | 1532 | 111 | 1603 | 397 | 75 | 18.8917 | |