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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68801-68850 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2061 | 95.1523 | 99.3506 | 63.9597 | 1531 | 78 | 1530 | 10 | 3 | 30.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9828 | 98.1401 | 97.8261 | 72.8896 | 1583 | 30 | 1530 | 34 | 24 | 70.5882 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.3921 | 86.0531 | 99.7392 | 40.4272 | 1524 | 247 | 1530 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5453 | 99.6109 | 99.4798 | 78.1348 | 1536 | 6 | 1530 | 8 | 5 | 62.5000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 91.9469 | 85.2839 | 99.7392 | 69.0289 | 1472 | 254 | 1530 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.4573 | 97.8921 | 99.0291 | 73.9064 | 1579 | 34 | 1530 | 15 | 10 | 66.6667 | |
| jli-custom | INDEL | * | map_l100_m0_e0 | * | 97.9520 | 97.8887 | 98.0154 | 84.8379 | 1530 | 33 | 1531 | 31 | 10 | 32.2581 | |
| jlack-gatk | INDEL | * | map_l100_m0_e0 | * | 93.6372 | 97.7607 | 89.8474 | 89.5254 | 1528 | 35 | 1531 | 173 | 12 | 6.9364 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2545 | 99.2866 | 99.2223 | 77.4843 | 1531 | 11 | 1531 | 12 | 9 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.9882 | 97.7573 | 96.2312 | 67.1549 | 1482 | 34 | 1532 | 60 | 2 | 3.3333 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3837 | 99.3515 | 99.4160 | 78.0297 | 1532 | 10 | 1532 | 9 | 5 | 55.5556 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5131 | 99.4163 | 99.6101 | 78.2596 | 1533 | 9 | 1533 | 6 | 5 | 83.3333 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8731 | 97.9527 | 93.8800 | 90.3027 | 1531 | 32 | 1534 | 100 | 9 | 9.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.5966 | 91.5686 | 97.8316 | 84.9216 | 1401 | 129 | 1534 | 34 | 25 | 73.5294 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 94.5966 | 91.5686 | 97.8316 | 84.9216 | 1401 | 129 | 1534 | 34 | 25 | 73.5294 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5135 | 99.4812 | 99.5457 | 78.2406 | 1534 | 8 | 1534 | 7 | 5 | 71.4286 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4812 | 99.4812 | 99.4812 | 78.2296 | 1534 | 8 | 1534 | 8 | 5 | 62.5000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6106 | 99.5460 | 99.6753 | 76.5566 | 1535 | 7 | 1535 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8004 | 97.8301 | 97.7707 | 70.7090 | 1578 | 35 | 1535 | 35 | 26 | 74.2857 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.0096 | 95.7223 | 96.2986 | 71.4542 | 1544 | 69 | 1535 | 59 | 56 | 94.9153 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.6612 | 97.3341 | 95.9975 | 47.6081 | 1643 | 45 | 1535 | 64 | 22 | 34.3750 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6451 | 98.4501 | 98.8410 | 73.7492 | 1588 | 25 | 1535 | 18 | 13 | 72.2222 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 87.3498 | 78.5324 | 98.3974 | 44.5432 | 1295 | 354 | 1535 | 25 | 23 | 92.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | * | 97.7081 | 98.0806 | 97.3384 | 87.7968 | 1533 | 30 | 1536 | 42 | 9 | 21.4286 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4819 | 99.6109 | 99.3532 | 78.1854 | 1536 | 6 | 1536 | 10 | 5 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.2748 | 97.9551 | 96.6038 | 68.7500 | 1485 | 31 | 1536 | 54 | 2 | 3.7037 | |
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | * | 94.5754 | 92.5746 | 96.6646 | 59.3502 | 1521 | 122 | 1536 | 53 | 45 | 84.9057 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002complexvar | * | 96.3580 | 94.4005 | 98.3985 | 65.2184 | 1551 | 92 | 1536 | 25 | 15 | 60.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | * | homalt | 97.0923 | 98.3985 | 95.8203 | 73.2208 | 1536 | 25 | 1536 | 67 | 60 | 89.5522 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5466 | 99.6757 | 99.4179 | 77.8922 | 1537 | 5 | 1537 | 9 | 5 | 55.5556 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5144 | 99.6757 | 99.3536 | 78.0162 | 1537 | 5 | 1537 | 10 | 5 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8998 | 98.4501 | 99.3536 | 73.4648 | 1588 | 25 | 1537 | 10 | 8 | 80.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.2126 | 73.2143 | 88.6901 | 63.6383 | 1558 | 570 | 1537 | 196 | 162 | 82.6531 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 56.6114 | 42.2485 | 85.7701 | 63.4733 | 1537 | 2101 | 1537 | 255 | 235 | 92.1569 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 32.7321 | 22.6516 | 58.9793 | 55.7780 | 1565 | 5344 | 1537 | 1069 | 1020 | 95.4163 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.0761 | 81.4952 | 98.2120 | 71.9556 | 1537 | 349 | 1538 | 28 | 27 | 96.4286 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 56.5337 | 42.2760 | 85.3023 | 63.5610 | 1538 | 2100 | 1538 | 265 | 235 | 88.6792 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7710 | 98.6981 | 98.8439 | 73.8011 | 1592 | 21 | 1539 | 18 | 13 | 72.2222 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7082 | 98.6361 | 98.7805 | 73.2624 | 1591 | 22 | 1539 | 19 | 14 | 73.6842 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7393 | 98.6981 | 98.7805 | 73.6869 | 1592 | 21 | 1539 | 19 | 14 | 73.6842 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7390 | 98.7601 | 98.7179 | 73.4197 | 1593 | 20 | 1540 | 20 | 15 | 75.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | * | 96.5485 | 94.7048 | 98.4655 | 65.1748 | 1556 | 87 | 1540 | 24 | 18 | 75.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.4509 | 70.3322 | 91.2863 | 53.7682 | 2456 | 1036 | 1540 | 147 | 142 | 96.5986 | |
| ckim-vqsr | INDEL | I1_5 | HG002complexvar | hetalt | 92.1493 | 85.6315 | 99.7409 | 68.7323 | 1478 | 248 | 1540 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | * | homalt | 98.0267 | 98.6547 | 97.4067 | 67.1719 | 1540 | 21 | 1540 | 41 | 36 | 87.8049 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | * | 98.2754 | 98.3365 | 98.2143 | 84.4120 | 1537 | 26 | 1540 | 28 | 6 | 21.4286 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 92.1829 | 85.6895 | 99.7411 | 68.7184 | 1479 | 247 | 1541 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | * | 95.8319 | 98.4005 | 93.3939 | 90.2135 | 1538 | 25 | 1541 | 109 | 10 | 9.1743 | |