PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68751-68800 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 69.0860 | 69.8980 | 68.2927 | 72.8277 | 1507 | 649 | 1512 | 702 | 277 | 39.4587 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7110 | 86.7096 | 99.6050 | 29.5781 | 1481 | 227 | 1513 | 6 | 6 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l125_m0_e0 | homalt | 80.6373 | 68.2575 | 98.5026 | 73.5992 | 1516 | 705 | 1513 | 23 | 23 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 53.2289 | 38.9258 | 84.1491 | 87.7362 | 1464 | 2297 | 1513 | 285 | 71 | 24.9123 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 53.2289 | 38.9258 | 84.1491 | 87.7362 | 1464 | 2297 | 1513 | 285 | 71 | 24.9123 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.9204 | 86.8267 | 99.9340 | 30.1521 | 1483 | 225 | 1514 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.1724 | 96.1517 | 94.2128 | 83.1481 | 1749 | 70 | 1514 | 93 | 61 | 65.5914 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.1724 | 96.1517 | 94.2128 | 83.1481 | 1749 | 70 | 1514 | 93 | 61 | 65.5914 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.0134 | 85.8844 | 99.0844 | 88.5511 | 1515 | 249 | 1515 | 14 | 9 | 64.2857 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | * | 96.7114 | 96.8650 | 96.5583 | 90.6490 | 1514 | 49 | 1515 | 54 | 7 | 12.9630 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9578 | 85.8844 | 98.9556 | 88.3338 | 1515 | 249 | 1516 | 16 | 4 | 25.0000 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7487 | 98.3509 | 99.1498 | 68.6809 | 1491 | 25 | 1516 | 13 | 2 | 15.3846 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.8428 | 99.7468 | 94.1030 | 63.9275 | 1576 | 4 | 1516 | 95 | 6 | 6.3158 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 87.5446 | 82.8245 | 92.8353 | 37.8851 | 3337 | 692 | 1516 | 117 | 56 | 47.8632 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 34.4736 | 24.7232 | 56.9231 | 34.0999 | 737 | 2244 | 1517 | 1148 | 971 | 84.5819 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7600 | 86.9438 | 99.4102 | 29.9035 | 1485 | 223 | 1517 | 9 | 8 | 88.8889 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 41.7184 | 27.7293 | 84.1930 | 71.7265 | 381 | 993 | 1518 | 285 | 107 | 37.5439 | |
| gduggal-snapplat | INDEL | I6_15 | * | homalt | 35.4854 | 25.0841 | 60.6230 | 61.9684 | 1565 | 4674 | 1518 | 986 | 436 | 44.2191 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9808 | 97.2102 | 98.7638 | 71.4047 | 1568 | 45 | 1518 | 19 | 12 | 63.1579 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.6760 | 92.6622 | 98.8925 | 36.2012 | 1528 | 121 | 1518 | 17 | 17 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.7687 | 97.6654 | 97.8723 | 76.4322 | 1506 | 36 | 1518 | 33 | 15 | 45.4545 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | * | 97.4296 | 96.9290 | 97.9355 | 98.6839 | 1515 | 48 | 1518 | 32 | 12 | 37.5000 | |
| ckim-isaac | SNP | tv | map_l150_m0_e0 | het | 69.6130 | 53.4647 | 99.7375 | 84.2187 | 1520 | 1323 | 1520 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | * | 97.6521 | 97.0569 | 98.2547 | 83.9206 | 1517 | 46 | 1520 | 27 | 6 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.3335 | 96.2182 | 96.4490 | 61.4990 | 1552 | 61 | 1521 | 56 | 30 | 53.5714 | |
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | * | 97.3109 | 97.1209 | 97.5016 | 98.2621 | 1518 | 45 | 1522 | 39 | 11 | 28.2051 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 92.8504 | 88.1608 | 98.0670 | 34.4871 | 3552 | 477 | 1522 | 30 | 30 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6502 | 96.4816 | 96.8193 | 81.9352 | 1755 | 64 | 1522 | 50 | 37 | 74.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.6502 | 96.4816 | 96.8193 | 81.9352 | 1755 | 64 | 1522 | 50 | 37 | 74.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7317 | 98.3139 | 99.1531 | 74.1059 | 1516 | 26 | 1522 | 13 | 2 | 15.3846 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 74.6510 | 71.8045 | 77.7324 | 73.3424 | 1528 | 600 | 1522 | 436 | 398 | 91.2844 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | * | 97.2514 | 97.1849 | 97.3180 | 98.3412 | 1519 | 44 | 1524 | 42 | 9 | 21.4286 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.3830 | 98.4436 | 98.3226 | 73.6125 | 1518 | 24 | 1524 | 26 | 5 | 19.2308 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | * | 97.7226 | 97.3768 | 98.0707 | 83.8643 | 1522 | 41 | 1525 | 30 | 4 | 13.3333 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3809 | 98.8975 | 99.8690 | 76.5041 | 1525 | 17 | 1525 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.2696 | 96.9214 | 93.6732 | 86.2372 | 1763 | 56 | 1525 | 103 | 74 | 71.8447 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.2696 | 96.9214 | 93.6732 | 86.2372 | 1763 | 56 | 1525 | 103 | 74 | 71.8447 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | * | 95.2252 | 96.0972 | 94.3688 | 85.7659 | 1502 | 61 | 1525 | 91 | 22 | 24.1758 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.1162 | 97.6582 | 96.5801 | 61.6655 | 1543 | 37 | 1525 | 54 | 6 | 11.1111 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e1 | homalt | 40.1526 | 25.1235 | 99.9345 | 89.0207 | 1526 | 4548 | 1526 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | het | 70.5665 | 85.7303 | 59.9607 | 91.6253 | 1532 | 255 | 1526 | 1019 | 231 | 22.6693 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2196 | 98.8975 | 99.5437 | 78.3395 | 1525 | 17 | 1527 | 7 | 4 | 57.1429 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | * | 32.0765 | 19.1186 | 99.5437 | 98.3572 | 1527 | 6460 | 1527 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4788 | 99.0272 | 99.9346 | 76.0876 | 1527 | 15 | 1527 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3817 | 99.0272 | 99.7387 | 76.7007 | 1527 | 15 | 1527 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4468 | 99.0921 | 99.8040 | 75.9768 | 1528 | 14 | 1528 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.4506 | 95.0280 | 100.0000 | 56.4672 | 1529 | 80 | 1528 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | het | 87.4983 | 97.7667 | 79.1818 | 87.0966 | 1182 | 27 | 1529 | 402 | 157 | 39.0547 | |