PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68551-68600 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2475 | 95.8170 | 98.7214 | 83.8109 | 1466 | 64 | 1467 | 19 | 9 | 47.3684 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2475 | 95.8170 | 98.7214 | 83.8109 | 1466 | 64 | 1467 | 19 | 9 | 47.3684 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.8858 | 98.0576 | 99.7281 | 33.7984 | 1464 | 29 | 1467 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.0582 | 79.0032 | 99.4576 | 57.3453 | 1490 | 396 | 1467 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.6043 | 64.1917 | 86.2515 | 56.0661 | 1366 | 762 | 1468 | 234 | 231 | 98.7179 | |
| gduggal-bwavard | INDEL | * | map_l100_m0_e0 | * | 89.2130 | 93.9219 | 84.9537 | 89.1607 | 1468 | 95 | 1468 | 260 | 67 | 25.7692 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0534 | 98.1246 | 100.0000 | 31.5937 | 1465 | 28 | 1468 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6313 | 99.3324 | 99.9319 | 72.9366 | 1488 | 10 | 1468 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 79.9976 | 76.6057 | 83.7037 | 88.2507 | 1467 | 448 | 1469 | 286 | 139 | 48.6014 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | * | 90.4000 | 93.9859 | 87.0777 | 93.2660 | 1469 | 94 | 1469 | 218 | 66 | 30.2752 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4553 | 99.7222 | 99.1897 | 69.2866 | 1436 | 4 | 1469 | 12 | 1 | 8.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.6408 | 85.0117 | 99.3911 | 29.8196 | 1452 | 256 | 1469 | 9 | 9 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | homalt | 33.4015 | 20.0491 | 100.0000 | 91.6220 | 1469 | 5858 | 1469 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0215 | 98.2585 | 99.7963 | 32.1198 | 1467 | 26 | 1470 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1887 | 96.0131 | 98.3936 | 84.9441 | 1469 | 61 | 1470 | 24 | 17 | 70.8333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1887 | 96.0131 | 98.3936 | 84.9441 | 1469 | 61 | 1470 | 24 | 17 | 70.8333 | |
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | het | 36.3374 | 54.3269 | 27.2981 | 31.6711 | 113 | 95 | 1470 | 3915 | 3322 | 84.8531 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1896 | 97.1447 | 99.2573 | 75.8638 | 1497 | 44 | 1470 | 11 | 4 | 36.3636 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3220 | 99.7917 | 98.8568 | 68.8391 | 1437 | 3 | 1470 | 17 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9276 | 97.0798 | 98.7903 | 74.9326 | 1496 | 45 | 1470 | 18 | 5 | 27.7778 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 68.8650 | 53.4107 | 96.9038 | 66.6154 | 1472 | 1284 | 1471 | 47 | 36 | 76.5957 | |
| gduggal-bwafb | INDEL | I6_15 | HG002compoundhet | hetalt | 82.7582 | 72.8242 | 95.8306 | 40.7336 | 6217 | 2320 | 1471 | 64 | 63 | 98.4375 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7911 | 98.1976 | 99.3919 | 80.6257 | 1471 | 27 | 1471 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.3946 | 98.1976 | 98.5925 | 80.3787 | 1471 | 27 | 1471 | 21 | 19 | 90.4762 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.8073 | 97.0976 | 98.5274 | 67.7670 | 1472 | 44 | 1472 | 22 | 11 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.5209 | 83.4104 | 92.0575 | 35.5502 | 1443 | 287 | 1472 | 127 | 115 | 90.5512 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1243 | 68.8494 | 98.7257 | 59.8978 | 1472 | 666 | 1472 | 19 | 4 | 21.0526 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0119 | 68.8026 | 95.5844 | 61.7961 | 1471 | 667 | 1472 | 68 | 5 | 7.3529 | |
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | het | 97.8398 | 97.7424 | 97.9375 | 93.0288 | 1472 | 34 | 1472 | 31 | 4 | 12.9032 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.2238 | 98.4595 | 100.0000 | 33.1973 | 1470 | 23 | 1473 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0896 | 98.3925 | 99.7967 | 32.3556 | 1469 | 24 | 1473 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | * | 96.4953 | 94.2418 | 98.8591 | 79.2883 | 1473 | 90 | 1473 | 17 | 4 | 23.5294 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 63.2704 | 73.8711 | 55.3303 | 67.2928 | 1456 | 515 | 1474 | 1190 | 1180 | 99.1597 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 63.2704 | 73.8711 | 55.3303 | 67.2928 | 1456 | 515 | 1474 | 1190 | 1180 | 99.1597 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8593 | 98.3311 | 99.3931 | 83.7319 | 1473 | 25 | 1474 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.2215 | 99.4737 | 89.4961 | 39.1577 | 1323 | 7 | 1474 | 173 | 173 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.3131 | 96.7575 | 97.8752 | 72.7174 | 1492 | 50 | 1474 | 32 | 29 | 90.6250 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.2477 | 83.3900 | 93.7063 | 86.7826 | 1471 | 293 | 1474 | 99 | 13 | 13.1313 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1576 | 98.5265 | 99.7969 | 32.7413 | 1471 | 22 | 1474 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | het | 98.2510 | 98.1688 | 98.3333 | 82.0789 | 1233 | 23 | 1475 | 25 | 8 | 32.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.0862 | 98.1976 | 75.0636 | 85.4109 | 1471 | 27 | 1475 | 490 | 97 | 19.7959 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0444 | 86.0070 | 98.9933 | 33.2437 | 1469 | 239 | 1475 | 15 | 15 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | * | homalt | 93.8558 | 94.3626 | 93.3544 | 58.5193 | 1473 | 88 | 1475 | 105 | 76 | 72.3810 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1916 | 98.5934 | 99.7970 | 32.9401 | 1472 | 21 | 1475 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3282 | 96.4052 | 98.2690 | 85.0309 | 1475 | 55 | 1476 | 26 | 18 | 69.2308 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3282 | 96.4052 | 98.2690 | 85.0309 | 1475 | 55 | 1476 | 26 | 18 | 69.2308 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | het | 98.0731 | 98.0080 | 98.1383 | 92.9489 | 1476 | 30 | 1476 | 28 | 1 | 3.5714 | |
| hfeng-pmm2 | SNP | * | map_l250_m0_e0 | het | 97.4257 | 98.0080 | 96.8504 | 93.8031 | 1476 | 30 | 1476 | 48 | 4 | 8.3333 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6147 | 97.5887 | 99.6624 | 46.5729 | 1457 | 36 | 1476 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.9641 | 82.1855 | 72.3665 | 61.3081 | 1790 | 388 | 1477 | 564 | 505 | 89.5390 | |