PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68201-68250 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | * | 82.9443 | 71.4801 | 98.7883 | 92.1357 | 1386 | 553 | 1386 | 17 | 7 | 41.1765 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8914 | 99.7831 | 100.0000 | 57.0233 | 1380 | 3 | 1386 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.8939 | 99.9277 | 97.8814 | 65.9861 | 1382 | 1 | 1386 | 30 | 18 | 60.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9888 | 97.4071 | 98.5775 | 24.3272 | 1390 | 37 | 1386 | 20 | 20 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | het | 59.6085 | 42.5630 | 99.4265 | 97.5359 | 1385 | 1869 | 1387 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.9782 | 94.3258 | 99.7842 | 76.6072 | 1413 | 85 | 1387 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 93.4806 | 90.2724 | 96.9252 | 69.0862 | 1392 | 150 | 1387 | 44 | 22 | 50.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.0806 | 98.1780 | 100.0000 | 28.9811 | 1401 | 26 | 1387 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | HG002compoundhet | het | 85.6766 | 80.3241 | 91.7935 | 77.7237 | 1388 | 340 | 1387 | 124 | 122 | 98.3871 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 68.4389 | 86.7948 | 56.4917 | 55.1969 | 1400 | 213 | 1388 | 1069 | 1020 | 95.4163 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.7372 | 91.6432 | 54.9921 | 52.9543 | 976 | 89 | 1388 | 1136 | 1069 | 94.1021 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | het | 97.8130 | 98.2955 | 97.3352 | 88.8707 | 1384 | 24 | 1388 | 38 | 3 | 7.8947 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | * | 98.2631 | 98.2955 | 98.2307 | 88.7365 | 1384 | 24 | 1388 | 25 | 6 | 24.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | * | 88.0989 | 95.5920 | 81.6951 | 88.4146 | 1106 | 51 | 1388 | 311 | 102 | 32.7974 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | het | 74.0125 | 93.3599 | 61.3074 | 94.5783 | 1406 | 100 | 1388 | 876 | 18 | 2.0548 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 43.8638 | 34.2213 | 61.0721 | 38.4199 | 167 | 321 | 1390 | 886 | 815 | 91.9865 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | het | 97.9886 | 98.4375 | 97.5439 | 89.1635 | 1386 | 22 | 1390 | 35 | 5 | 14.2857 | |
| gduggal-bwaplat | INDEL | D16_PLUS | * | homalt | 89.7870 | 82.0922 | 99.0734 | 63.7561 | 1389 | 303 | 1390 | 13 | 11 | 84.6154 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | het | 74.2630 | 62.0134 | 92.5433 | 78.0056 | 1386 | 849 | 1390 | 112 | 68 | 60.7143 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | * | 95.7609 | 98.4375 | 93.2260 | 93.1205 | 1386 | 22 | 1390 | 101 | 9 | 8.9109 | |
| ckim-gatk | INDEL | * | map_l125_m2_e1 | het | 95.4354 | 98.5085 | 92.5482 | 92.5354 | 1387 | 21 | 1391 | 112 | 7 | 6.2500 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | * | 76.7237 | 62.5169 | 99.2862 | 94.5201 | 1391 | 834 | 1391 | 10 | 2 | 20.0000 | |
| jpowers-varprowl | INDEL | * | segdup | het | 90.0339 | 94.9523 | 85.6000 | 95.0457 | 1392 | 74 | 1391 | 234 | 206 | 88.0342 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | het | 87.8989 | 80.4977 | 96.7989 | 73.8775 | 1391 | 337 | 1391 | 46 | 42 | 91.3043 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 90.3446 | 96.7651 | 84.7231 | 88.8814 | 1376 | 46 | 1392 | 251 | 38 | 15.1394 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | het | 90.4455 | 98.4375 | 83.6538 | 91.9035 | 1386 | 22 | 1392 | 272 | 73 | 26.8382 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | * | 97.9932 | 98.6506 | 97.3445 | 90.3934 | 1389 | 19 | 1393 | 38 | 6 | 15.7895 | |
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | * | 98.0622 | 98.6506 | 97.4808 | 90.7478 | 1389 | 19 | 1393 | 36 | 7 | 19.4444 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | het | 90.2202 | 92.4967 | 88.0531 | 95.2498 | 1393 | 113 | 1393 | 189 | 29 | 15.3439 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.3222 | 88.6547 | 76.8340 | 52.5393 | 1430 | 183 | 1393 | 420 | 417 | 99.2857 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | * | 97.2377 | 96.5254 | 97.9606 | 88.6503 | 1389 | 50 | 1393 | 29 | 5 | 17.2414 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.8852 | 91.7343 | 90.0517 | 74.0181 | 1243 | 112 | 1394 | 154 | 131 | 85.0649 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | * | 46.6065 | 33.3972 | 77.1018 | 65.0425 | 1394 | 2780 | 1394 | 414 | 356 | 85.9903 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | * | 97.5801 | 96.5949 | 98.5856 | 88.8230 | 1390 | 49 | 1394 | 20 | 4 | 20.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 59.8233 | 47.0725 | 82.0483 | 56.7574 | 1013 | 1139 | 1394 | 305 | 138 | 45.2459 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.6404 | 92.1400 | 97.2803 | 85.0563 | 1395 | 119 | 1395 | 39 | 17 | 43.5897 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | * | 67.9362 | 62.5618 | 74.3207 | 90.8519 | 1392 | 833 | 1395 | 482 | 312 | 64.7303 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2943 | 98.5985 | 100.0000 | 25.4409 | 1407 | 20 | 1395 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 65.1903 | 73.6735 | 58.4590 | 47.5626 | 361 | 129 | 1396 | 992 | 627 | 63.2056 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 81.6840 | 71.9940 | 94.3881 | 86.6528 | 964 | 375 | 1396 | 83 | 16 | 19.2771 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 51.8358 | 37.1747 | 85.5917 | 62.9991 | 1400 | 2366 | 1396 | 235 | 216 | 91.9149 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.8358 | 37.1747 | 85.5917 | 62.9991 | 1400 | 2366 | 1396 | 235 | 216 | 91.9149 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | homalt | 88.7618 | 79.9314 | 99.7857 | 88.9135 | 1398 | 351 | 1397 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.7959 | 37.2013 | 85.2349 | 63.2016 | 1401 | 2365 | 1397 | 242 | 216 | 89.2562 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 51.7959 | 37.2013 | 85.2349 | 63.2016 | 1401 | 2365 | 1397 | 242 | 216 | 89.2562 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 80.3562 | 86.2869 | 75.1884 | 83.1152 | 1227 | 195 | 1397 | 461 | 231 | 50.1085 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 68.8039 | 91.6288 | 55.0827 | 70.2532 | 1412 | 129 | 1398 | 1140 | 1083 | 95.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5761 | 99.5795 | 99.5726 | 29.1625 | 1421 | 6 | 1398 | 6 | 2 | 33.3333 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 35.0458 | 95.2883 | 21.4714 | 85.0675 | 1355 | 67 | 1398 | 5113 | 85 | 1.6624 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.9774 | 97.8472 | 98.1079 | 69.1926 | 1409 | 31 | 1400 | 27 | 11 | 40.7407 | |