PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67651-67700 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.6949 | 100.0000 | 35.4886 | 1307 | 4 | 1307 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7748 | 97.6522 | 99.9235 | 77.0526 | 1331 | 32 | 1307 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | het | 97.3464 | 97.2285 | 97.4646 | 85.8260 | 1298 | 37 | 1307 | 34 | 9 | 26.4706 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | het | 92.7987 | 86.8526 | 99.6189 | 78.5270 | 1308 | 198 | 1307 | 5 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | * | 97.8620 | 97.3842 | 98.3446 | 98.9844 | 1303 | 35 | 1307 | 22 | 10 | 45.4545 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8855 | 99.7712 | 100.0000 | 34.7956 | 1308 | 3 | 1308 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | * | 82.4716 | 70.7792 | 98.7915 | 91.7846 | 1308 | 540 | 1308 | 16 | 6 | 37.5000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.2462 | 89.4980 | 77.8108 | 88.9364 | 1355 | 159 | 1308 | 373 | 121 | 32.4397 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7712 | 99.7712 | 99.7712 | 36.2974 | 1308 | 3 | 1308 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 76.9319 | 72.4891 | 81.9549 | 59.4512 | 498 | 189 | 1308 | 288 | 179 | 62.1528 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.4592 | 94.7518 | 94.1685 | 74.3063 | 1336 | 74 | 1308 | 81 | 70 | 86.4198 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8126 | 97.7990 | 99.8474 | 77.0523 | 1333 | 30 | 1309 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.0222 | 1309 | 2 | 1309 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 35.1338 | 1309 | 2 | 1309 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.7794 | 94.2322 | 99.4681 | 58.4858 | 1307 | 80 | 1309 | 7 | 1 | 14.2857 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.6480 | 1309 | 2 | 1309 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3783 | 86.4597 | 99.1667 | 88.2132 | 1309 | 205 | 1309 | 11 | 8 | 72.7273 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.3405 | 66.4921 | 81.7614 | 45.2275 | 1397 | 704 | 1309 | 292 | 281 | 96.2329 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.5500 | 1309 | 2 | 1309 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e1 | homalt | 85.1502 | 74.4357 | 99.4681 | 88.0298 | 1319 | 453 | 1309 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | * | map_l125_m2_e1 | het | 94.9130 | 92.6847 | 97.2511 | 89.9694 | 1305 | 103 | 1309 | 37 | 5 | 13.5135 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.3288 | 97.1175 | 97.5410 | 72.9162 | 1314 | 39 | 1309 | 33 | 32 | 96.9697 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | * | 77.4662 | 68.4073 | 89.2906 | 77.7912 | 1310 | 605 | 1309 | 157 | 136 | 86.6242 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.7458 | 1309 | 2 | 1309 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | * | 92.4162 | 91.0354 | 93.8395 | 90.8085 | 1310 | 129 | 1310 | 86 | 55 | 63.9535 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | * | 67.4524 | 62.0788 | 73.8444 | 90.3002 | 1308 | 799 | 1310 | 464 | 300 | 64.6552 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | het | 97.6831 | 97.6779 | 97.6883 | 86.3886 | 1304 | 31 | 1310 | 31 | 10 | 32.2581 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | het | 80.2443 | 77.5134 | 83.1746 | 91.4579 | 1303 | 378 | 1310 | 265 | 10 | 3.7736 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.7189 | 99.8474 | 97.6155 | 43.1356 | 1309 | 2 | 1310 | 32 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 35.8158 | 1310 | 1 | 1310 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8501 | 97.8723 | 99.8476 | 77.1269 | 1334 | 29 | 1310 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3785 | 86.4597 | 99.1673 | 87.8741 | 1309 | 205 | 1310 | 11 | 4 | 36.3636 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 34.5327 | 1310 | 1 | 1310 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 35.5315 | 1310 | 1 | 1310 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.1428 | 53.3144 | 87.1011 | 85.8167 | 1311 | 1148 | 1310 | 194 | 30 | 15.4639 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | het | 93.4243 | 92.8109 | 94.0459 | 85.2736 | 1291 | 100 | 1311 | 83 | 14 | 16.8675 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | het | 98.3481 | 98.0524 | 98.6456 | 86.0194 | 1309 | 26 | 1311 | 18 | 4 | 22.2222 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2022 | 100.0000 | 96.4680 | 43.7034 | 1311 | 0 | 1311 | 48 | 32 | 66.6667 | |
| ciseli-custom | INDEL | * | segdup | het | 88.2244 | 88.4038 | 88.0457 | 95.3251 | 1296 | 170 | 1311 | 178 | 90 | 50.5618 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2390 | 100.0000 | 96.5390 | 41.8664 | 1311 | 0 | 1311 | 47 | 32 | 68.0851 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | * | 44.3210 | 31.1015 | 77.0858 | 66.5750 | 1649 | 3653 | 1312 | 390 | 129 | 33.0769 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 97.3100 | 97.0029 | 97.6190 | 83.7387 | 1327 | 41 | 1312 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.8686 | 89.9090 | 93.9155 | 56.7894 | 1185 | 133 | 1312 | 85 | 81 | 95.2941 | |
| dgrover-gatk | SNP | tv | map_l150_m0_e0 | homalt | 99.2811 | 98.7952 | 99.7719 | 75.6572 | 1312 | 16 | 1312 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3242 | 93.9349 | 96.7552 | 73.1272 | 1270 | 82 | 1312 | 44 | 43 | 97.7273 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | homalt | 64.3926 | 47.5190 | 99.8478 | 66.4710 | 1312 | 1449 | 1312 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | homalt | 99.5466 | 99.4729 | 99.6203 | 81.0066 | 1321 | 7 | 1312 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | * | 97.5922 | 96.4181 | 98.7952 | 83.8737 | 1319 | 49 | 1312 | 16 | 5 | 31.2500 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9269 | 85.8170 | 96.6839 | 77.1395 | 1313 | 217 | 1312 | 45 | 41 | 91.1111 | |