PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67401-67450 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | homalt | 98.5133 | 98.2826 | 98.7451 | 83.8095 | 1259 | 22 | 1259 | 16 | 9 | 56.2500 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | het | 98.4365 | 99.1325 | 97.7502 | 84.2651 | 1257 | 11 | 1260 | 29 | 2 | 6.8966 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1455 | 99.1325 | 93.3333 | 89.3667 | 1257 | 11 | 1260 | 90 | 6 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1254 | 97.5552 | 94.7368 | 83.5172 | 1237 | 31 | 1260 | 70 | 7 | 10.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5262 | 99.6838 | 99.3691 | 86.9359 | 1261 | 4 | 1260 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | * | 96.5147 | 94.1704 | 98.9788 | 84.7782 | 1260 | 78 | 1260 | 13 | 3 | 23.0769 | |
| cchapple-custom | SNP | tv | map_l150_m0_e0 | homalt | 97.4517 | 95.0301 | 100.0000 | 73.1873 | 1262 | 66 | 1261 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e1 | homalt | 98.5552 | 98.5948 | 98.5156 | 84.6468 | 1263 | 18 | 1261 | 19 | 10 | 52.6316 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9665 | 97.1234 | 98.8245 | 57.1668 | 1283 | 38 | 1261 | 15 | 8 | 53.3333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6555 | 81.5055 | 88.0587 | 71.2392 | 1256 | 285 | 1261 | 171 | 87 | 50.8772 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.5917 | 99.2114 | 97.9798 | 84.8890 | 1258 | 10 | 1261 | 26 | 4 | 15.3846 | |
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | * | 90.8174 | 94.2451 | 87.6303 | 95.0045 | 1261 | 77 | 1261 | 178 | 51 | 28.6517 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9359 | 94.3241 | 93.5508 | 86.7120 | 1263 | 76 | 1262 | 87 | 31 | 35.6322 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | * | 60.3106 | 43.2785 | 99.4484 | 91.3314 | 1262 | 1654 | 1262 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.7002 | 91.4894 | 82.3875 | 75.9605 | 1247 | 116 | 1263 | 270 | 194 | 71.8519 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.1912 | 96.4859 | 97.9070 | 66.9992 | 1263 | 46 | 1263 | 27 | 23 | 85.1852 | |
| qzeng-custom | INDEL | * | map_l150_m2_e0 | * | 81.1578 | 71.3778 | 94.0432 | 94.0095 | 1005 | 403 | 1263 | 80 | 39 | 48.7500 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.4765 | 94.0254 | 99.0588 | 84.2359 | 1259 | 80 | 1263 | 12 | 4 | 33.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0809 | 95.6851 | 98.5179 | 60.2481 | 1264 | 57 | 1263 | 19 | 15 | 78.9474 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.7114 | 98.6729 | 98.7500 | 83.9418 | 1264 | 17 | 1264 | 16 | 8 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | homalt | 96.9490 | 98.6301 | 95.3243 | 81.9616 | 1152 | 16 | 1264 | 62 | 47 | 75.8065 | |
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | het | 95.3100 | 93.9476 | 96.7125 | 59.3663 | 1040 | 67 | 1265 | 43 | 36 | 83.7209 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | het | 82.2615 | 74.0824 | 92.4708 | 92.9115 | 989 | 346 | 1265 | 103 | 35 | 33.9806 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | het | 41.8044 | 26.6036 | 97.5328 | 80.1621 | 1265 | 3490 | 1265 | 32 | 1 | 3.1250 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e1 | homalt | 98.9836 | 98.8290 | 99.1386 | 83.0322 | 1266 | 15 | 1266 | 11 | 5 | 45.4545 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | homalt | 99.0206 | 98.5948 | 99.4501 | 82.2479 | 1263 | 18 | 1266 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | homalt | 98.8676 | 98.8290 | 98.9062 | 84.8287 | 1266 | 15 | 1266 | 14 | 7 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 75.2099 | 92.3698 | 63.4269 | 72.4538 | 1259 | 104 | 1266 | 730 | 77 | 10.5479 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2751 | 96.4259 | 98.1395 | 51.6854 | 1268 | 47 | 1266 | 24 | 20 | 83.3333 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9771 | 96.4259 | 97.5347 | 52.3145 | 1268 | 47 | 1266 | 32 | 24 | 75.0000 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | het | 65.1467 | 80.9233 | 54.5181 | 69.0092 | 3313 | 781 | 1267 | 1057 | 968 | 91.5799 | |
| gduggal-bwafb | INDEL | I16_PLUS | * | homalt | 86.5142 | 81.1659 | 92.6170 | 34.4514 | 1267 | 294 | 1267 | 101 | 100 | 99.0099 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | homalt | 98.9071 | 98.9071 | 98.9071 | 83.4560 | 1267 | 14 | 1267 | 14 | 9 | 64.2857 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | homalt | 88.1167 | 78.9048 | 99.7638 | 88.2047 | 1268 | 339 | 1267 | 3 | 3 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8288 | 94.8353 | 98.9080 | 47.7162 | 1267 | 69 | 1268 | 14 | 7 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4016 | 92.2695 | 98.7539 | 72.0200 | 1301 | 109 | 1268 | 16 | 9 | 56.2500 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | * | 93.6877 | 92.6277 | 94.7722 | 93.6399 | 1269 | 101 | 1269 | 70 | 31 | 44.2857 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.5084 | 97.1778 | 97.8412 | 76.7438 | 1033 | 30 | 1269 | 28 | 22 | 78.5714 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 94.6645 | 94.1361 | 95.1988 | 74.6771 | 899 | 56 | 1269 | 64 | 58 | 90.6250 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | * | 97.6374 | 97.4329 | 97.8428 | 85.0133 | 835 | 22 | 1270 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | * | 93.9648 | 93.7865 | 94.1438 | 86.6818 | 1283 | 85 | 1270 | 79 | 38 | 48.1013 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 82.2656 | 88.2213 | 77.0631 | 82.3781 | 1116 | 149 | 1270 | 378 | 203 | 53.7037 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | * | 95.9940 | 92.7007 | 99.5298 | 87.7555 | 1270 | 100 | 1270 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 93.7719 | 91.1243 | 96.5779 | 72.4607 | 1232 | 120 | 1270 | 45 | 42 | 93.3333 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | homalt | 99.0253 | 99.1413 | 98.9097 | 85.0193 | 1270 | 11 | 1270 | 14 | 6 | 42.8571 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | homalt | 99.2194 | 99.2194 | 99.2194 | 85.2079 | 1271 | 10 | 1271 | 10 | 5 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.5092 | 96.8061 | 98.2226 | 52.3389 | 1273 | 42 | 1271 | 23 | 16 | 69.5652 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 54.1237 | 72.0257 | 43.3492 | 26.9375 | 224 | 87 | 1271 | 1661 | 1654 | 99.5786 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | * | 69.1050 | 57.7869 | 85.9364 | 82.6204 | 1269 | 927 | 1271 | 208 | 160 | 76.9231 | |