PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67051-67100 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.1770 | 98.4477 | 99.9171 | 58.7551 | 1205 | 19 | 1205 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.3870 | 78.8652 | 48.9241 | 68.3622 | 1112 | 298 | 1205 | 1258 | 386 | 30.6836 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.4085 | 98.5294 | 87.0036 | 79.8311 | 1206 | 18 | 1205 | 180 | 12 | 6.6667 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | het | 82.4377 | 96.1369 | 72.1557 | 91.9661 | 871 | 35 | 1205 | 465 | 145 | 31.1828 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2633 | 96.3376 | 98.2070 | 76.6197 | 1210 | 46 | 1205 | 22 | 4 | 18.1818 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | homalt | 99.3814 | 99.4224 | 99.3405 | 78.4317 | 1205 | 7 | 1205 | 8 | 4 | 50.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | * | 58.5236 | 41.8112 | 97.4919 | 97.2532 | 1205 | 1677 | 1205 | 31 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.4386 | 95.2569 | 97.6499 | 83.7824 | 1205 | 60 | 1205 | 29 | 20 | 68.9655 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.4879 | 98.2070 | 98.7705 | 81.8398 | 1205 | 22 | 1205 | 15 | 10 | 66.6667 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.1973 | 91.2471 | 99.5050 | 29.3294 | 1178 | 113 | 1206 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | homalt | 99.5047 | 99.4224 | 99.5871 | 77.9738 | 1205 | 7 | 1206 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5407 | 96.4172 | 98.6907 | 74.9539 | 1211 | 45 | 1206 | 16 | 6 | 37.5000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 76.8190 | 64.3595 | 95.2607 | 61.2844 | 623 | 345 | 1206 | 60 | 23 | 38.3333 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.4884 | 95.1433 | 66.7958 | 80.7253 | 1195 | 61 | 1207 | 600 | 372 | 62.0000 | |
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.2899 | 99.4234 | 97.1820 | 55.6903 | 1207 | 7 | 1207 | 35 | 34 | 97.1429 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.8698 | 97.4170 | 96.3288 | 83.1947 | 1320 | 35 | 1207 | 46 | 34 | 73.9130 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | homalt | 98.5318 | 98.5330 | 98.5306 | 83.5835 | 1209 | 18 | 1207 | 18 | 10 | 55.5556 | |
| egarrison-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.5306 | 98.3700 | 98.6917 | 82.5435 | 1207 | 20 | 1207 | 16 | 9 | 56.2500 | |
| anovak-vg | SNP | * | map_l250_m0_e0 | het | 70.3786 | 80.8101 | 62.3323 | 96.0946 | 1217 | 289 | 1208 | 730 | 157 | 21.5068 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | homalt | 99.5051 | 99.4224 | 99.5878 | 78.4891 | 1205 | 7 | 1208 | 5 | 4 | 80.0000 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6721 | 99.3464 | 100.0000 | 51.9682 | 1216 | 8 | 1208 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_siren | homalt | 99.3823 | 99.4224 | 99.3421 | 78.6217 | 1205 | 7 | 1208 | 8 | 5 | 62.5000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1082 | 92.7162 | 93.5035 | 64.4487 | 1222 | 96 | 1209 | 84 | 76 | 90.4762 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.9916 | 95.5731 | 98.4528 | 83.7652 | 1209 | 56 | 1209 | 19 | 11 | 57.8947 | |
| ckim-vqsr | INDEL | I1_5 | map_siren | homalt | 99.5465 | 99.5050 | 99.5881 | 78.6343 | 1206 | 6 | 1209 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3201 | 98.9723 | 99.6702 | 83.1011 | 1252 | 13 | 1209 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3498 | 96.6561 | 98.0535 | 76.7797 | 1214 | 42 | 1209 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | homalt | 99.5056 | 99.5050 | 99.5062 | 78.6204 | 1206 | 6 | 1209 | 6 | 4 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | homalt | 99.6286 | 99.5050 | 99.7525 | 77.1148 | 1206 | 6 | 1209 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3840 | 98.8562 | 99.9174 | 59.5119 | 1210 | 14 | 1210 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2210 | 98.8562 | 99.5885 | 62.9799 | 1210 | 14 | 1210 | 5 | 5 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | HG002complexvar | homalt | 97.1497 | 99.6705 | 94.7533 | 55.9047 | 1210 | 4 | 1210 | 67 | 66 | 98.5075 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9617 | 96.7357 | 97.1888 | 78.6888 | 1215 | 41 | 1210 | 35 | 17 | 48.5714 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.9377 | 88.6347 | 47.6003 | 71.2150 | 1201 | 154 | 1210 | 1332 | 1313 | 98.5736 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3600 | 99.0514 | 99.6705 | 83.4424 | 1253 | 12 | 1210 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3133 | 97.9336 | 98.6960 | 78.2485 | 1327 | 28 | 1211 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 80.1806 | 69.7709 | 94.2412 | 74.1188 | 944 | 409 | 1211 | 74 | 69 | 93.2432 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.7307 | 90.6437 | 97.0353 | 73.3675 | 1211 | 125 | 1211 | 37 | 3 | 8.1081 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | homalt | 98.7765 | 98.6960 | 98.8571 | 82.9030 | 1211 | 16 | 1211 | 14 | 6 | 42.8571 | |
| ckim-dragen | INDEL | I6_15 | HG002complexvar | homalt | 97.8586 | 99.7529 | 96.0349 | 55.1086 | 1211 | 3 | 1211 | 50 | 50 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | homalt | 99.6298 | 99.7525 | 99.5074 | 78.6951 | 1209 | 3 | 1212 | 6 | 4 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | het | 96.5708 | 96.3376 | 96.8051 | 89.9162 | 1210 | 46 | 1212 | 40 | 4 | 10.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | homalt | 98.9792 | 98.7775 | 99.1817 | 81.8155 | 1212 | 15 | 1212 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2625 | 98.9379 | 99.5892 | 62.6573 | 1211 | 13 | 1212 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5713 | 92.7921 | 96.4200 | 59.1883 | 1223 | 95 | 1212 | 45 | 44 | 97.7778 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | * | 95.8482 | 92.5898 | 99.3443 | 64.3692 | 1212 | 97 | 1212 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_siren | homalt | 99.6709 | 99.8350 | 99.5074 | 76.9711 | 1210 | 2 | 1212 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I6_15 | HG002complexvar | homalt | 99.0196 | 99.8353 | 98.2172 | 53.8692 | 1212 | 2 | 1212 | 22 | 22 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | homalt | 98.8581 | 98.7775 | 98.9388 | 83.8582 | 1212 | 15 | 1212 | 13 | 7 | 53.8462 | |