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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1329 1330 1331 1332 1333 1334 1335 1336 1337 ... 1720 1721 » 66601-66650 / 86044 show all
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7338	99.6454	99.8224	41.5672	1124	4	1124	2	2	100.0000
gduggal-bwafb	INDEL	D6_15	HG002complexvar	homalt	93.8652	96.3216	91.5309	60.1040	1126	43	1124	104	101	97.1154
rpoplin-dv42	INDEL	I6_15	HG002complexvar	hetalt	95.0851	90.9240	99.6454	54.5161	1112	111	1124	4	4	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.4847	1124	4	1124	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8224	99.6454	100.0000	42.4180	1124	4	1124	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.6020	1124	4	1124	1	1	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	83.4407	85.5319	81.4493	59.0504	1206	204	1124	256	208	81.2500
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.7092	86.1153	98.0803	52.6837	1135	183	1124	22	22	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.5727	1124	4	1124	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.4707	92.3849	98.7698	48.9915	1104	91	1124	14	13	92.8571
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.7189	1125	3	1125	0	0
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	87.8983	88.3895	87.4126	38.3916	236	31	1125	162	161	99.3827
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	51.8392	1125	3	1125	1	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8225	99.7340	99.9112	52.5895	1125	3	1125	1	0	0.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	52.3709	1125	3	1125	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.5727	1125	3	1125	0	0
ckim-isaac	INDEL	D1_5	HG002compoundhet	het	68.7756	84.4907	57.9897	63.2088	1460	268	1125	815	730	89.5706
egarrison-hhga	INDEL	D1_5	map_l125_m2_e0	*	98.4252	98.4252	98.4252	86.5939	1125	18	1125	18	5	27.7778
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5545	99.7340	97.4026	53.7630	1125	3	1125	30	23	76.6667
ltrigg-rtg2	INDEL	D1_5	map_l125_m2_e1	*	98.0356	96.9749	99.1197	80.1572	1122	35	1126	10	1	10.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.9113	99.8227	100.0000	54.1531	1126	2	1126	0	0
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e1	*	98.2094	97.1478	99.2945	84.5735	1124	33	1126	8	1	12.5000
jmaeng-gatk	INDEL	D1_5	map_l125_m2_e0	*	96.1968	98.3377	94.1472	90.8640	1124	19	1126	70	6	8.5714
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	85.5631	82.9787	88.3137	74.1798	1131	232	1126	149	144	96.6443
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	46.4608	1126	2	1126	1	1	100.0000
gduggal-snapplat	INDEL	D1_5	HG002compoundhet	het	31.7181	49.3634	23.3658	68.0565	853	875	1126	3693	1755	47.5223
gduggal-snapplat	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.0245	92.0752	98.1691	77.4877	1127	97	1126	21	11	52.3810
anovak-vg	INDEL	*	map_l100_m2_e0	homalt	76.7170	87.3910	68.3667	80.9419	1102	159	1126	521	485	93.0902
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	54.5565	1126	2	1126	1	1	100.0000
ckim-dragen	INDEL	D1_5	map_l125_m2_e1	*	97.0711	97.4935	96.6524	88.4160	1128	29	1126	39	5	12.8205
gduggal-snapvard	INDEL	*	map_l150_m1_e0	het	82.1183	96.2573	71.6010	91.6254	823	32	1127	447	132	29.5302
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2514	99.9113	98.6002	57.2710	1127	1	1127	16	10	62.5000
ghariani-varprowl	INDEL	*	map_l100_m1_e0	homalt	94.7855	91.8500	97.9149	78.8807	1127	100	1127	24	8	33.3333
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0769	99.9113	98.2563	59.2395	1127	1	1127	20	10	50.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	84.4797	83.7858	85.1852	73.6297	1142	221	1127	196	156	79.5918
rpoplin-dv42	INDEL	D1_5	map_l125_m2_e0	*	98.3836	98.4252	98.3421	86.5303	1125	18	1127	19	8	42.1053
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.9665	85.1278	100.0000	30.7314	1099	192	1127	0	0
jli-custom	INDEL	D1_5	map_l125_m2_e0	*	98.6439	98.6002	98.6877	86.0337	1127	16	1128	15	5	33.3333
jpowers-varprowl	INDEL	*	map_l100_m1_e0	homalt	95.3105	91.9315	98.9474	78.3927	1128	99	1128	12	8	66.6667
gduggal-bwafb	INDEL	D1_5	map_l125_m2_e1	*	97.7499	97.6664	97.8336	87.0352	1130	27	1129	25	3	12.0000
gduggal-bwaplat	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.7591	92.2386	99.5591	69.5815	1129	95	1129	5	5	100.0000
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	80.2108	82.2072	78.3091	58.4509	1095	237	1130	313	202	64.5367
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	49.8447	1123	5	1130	0	0
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.1020	85.3602	100.0000	31.3904	1102	189	1130	0	0
gduggal-snapplat	INDEL	*	map_l150_m2_e1	*	80.1656	73.0368	88.8365	94.8724	1051	388	1130	142	20	14.0845
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.3978	1123	5	1130	0	0
dgrover-gatk	INDEL	D1_5	map_l125_m2_e0	*	98.6027	98.6877	98.5179	88.1508	1128	15	1130	17	4	23.5294
ckim-isaac	SNP	*	map_l250_m2_e0	homalt	59.1933	42.0700	99.8233	85.8571	1130	1556	1130	2	2	100.0000
jlack-gatk	INDEL	D1_5	map_l125_m2_e0	*	94.2098	98.7752	90.0478	89.8856	1129	14	1131	125	6	4.8000
ckim-gatk	INDEL	D1_5	map_l125_m2_e0	*	96.1316	98.7752	93.6258	90.6812	1129	14	1131	77	6	7.7922

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