PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66351-66400 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3456 | 98.3456 | 98.3456 | 85.8665 | 1070 | 18 | 1070 | 18 | 5 | 27.7778 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.8619 | 95.7143 | 94.0246 | 80.9444 | 1273 | 57 | 1070 | 68 | 57 | 83.8235 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.9552 | 93.5145 | 98.5267 | 75.6611 | 1067 | 74 | 1070 | 16 | 10 | 62.5000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 96.0523 | 98.2537 | 93.9474 | 90.3553 | 1069 | 19 | 1071 | 69 | 6 | 8.6957 | |
| ciseli-custom | INDEL | D6_15 | HG002complexvar | homalt | 60.1083 | 92.0445 | 44.6250 | 54.8278 | 1076 | 93 | 1071 | 1329 | 1061 | 79.8345 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9476 | 94.0760 | 100.0000 | 38.5189 | 1064 | 67 | 1071 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.3923 | 97.0109 | 99.8136 | 86.7219 | 1071 | 33 | 1071 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | HG002compoundhet | homalt | 40.4620 | 88.4498 | 26.2307 | 64.1465 | 291 | 38 | 1071 | 3012 | 2451 | 81.3745 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1656 | 90.9091 | 80.1047 | 46.7967 | 300 | 30 | 1071 | 266 | 88 | 33.0827 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9476 | 94.0760 | 100.0000 | 38.5189 | 1064 | 67 | 1071 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9945 | 94.1645 | 100.0000 | 38.4968 | 1065 | 66 | 1072 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3020 | 98.3456 | 98.2585 | 85.8752 | 1070 | 18 | 1072 | 19 | 8 | 42.1053 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.3938 | 98.5294 | 98.2585 | 65.1438 | 1072 | 16 | 1072 | 19 | 14 | 73.6842 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.1113 | 93.6897 | 96.5766 | 79.4254 | 1069 | 72 | 1072 | 38 | 21 | 55.2632 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5753 | 98.5294 | 98.6213 | 85.3547 | 1072 | 16 | 1073 | 15 | 5 | 33.3333 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | * | 94.6208 | 93.8758 | 95.3778 | 87.2043 | 1073 | 70 | 1073 | 52 | 27 | 51.9231 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.0949 | 95.8388 | 73.3424 | 87.1802 | 1451 | 63 | 1073 | 390 | 39 | 10.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | * | 82.2996 | 77.9971 | 87.1046 | 92.4495 | 1067 | 301 | 1074 | 159 | 8 | 5.0315 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | het | 89.7380 | 98.4556 | 82.4387 | 88.3144 | 765 | 12 | 1075 | 229 | 105 | 45.8515 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 60.3971 | 86.7094 | 46.3362 | 62.7309 | 1083 | 166 | 1075 | 1245 | 1170 | 93.9759 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 60.3971 | 86.7094 | 46.3362 | 62.7309 | 1083 | 166 | 1075 | 1245 | 1170 | 93.9759 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5322 | 98.6213 | 98.4432 | 87.6162 | 1073 | 15 | 1075 | 17 | 4 | 23.5294 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 96.0274 | 98.7132 | 93.4839 | 90.1867 | 1074 | 14 | 1076 | 75 | 6 | 8.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | homalt | 74.9769 | 69.1864 | 81.8251 | 30.1275 | 1080 | 481 | 1076 | 239 | 237 | 99.1632 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.8108 | 78.3843 | 99.8145 | 76.5550 | 1077 | 297 | 1076 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6703 | 98.8971 | 98.4446 | 64.4784 | 1076 | 12 | 1076 | 17 | 12 | 70.5882 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0336 | 98.8971 | 99.1705 | 63.1579 | 1076 | 12 | 1076 | 9 | 4 | 44.4444 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 94.0601 | 98.8051 | 89.7500 | 89.3096 | 1075 | 13 | 1077 | 123 | 6 | 4.8781 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | * | 95.8185 | 94.8064 | 96.8525 | 93.2732 | 1004 | 55 | 1077 | 35 | 29 | 82.8571 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7620 | 98.9890 | 98.5361 | 63.9274 | 1077 | 11 | 1077 | 16 | 12 | 75.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 38.9071 | 33.7695 | 45.8884 | 60.0034 | 1084 | 2126 | 1077 | 1270 | 1203 | 94.7244 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2177 | 99.0809 | 99.3548 | 63.5417 | 1078 | 10 | 1078 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | D1_5 | segdup | * | 97.7335 | 97.7335 | 97.7335 | 94.3200 | 1078 | 25 | 1078 | 25 | 22 | 88.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2878 | 94.3032 | 98.3577 | 77.3927 | 1076 | 65 | 1078 | 18 | 15 | 83.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | * | 97.6439 | 97.6428 | 97.6449 | 94.0680 | 1077 | 26 | 1078 | 26 | 21 | 80.7692 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002compoundhet | * | 58.0506 | 50.3033 | 68.6187 | 53.6851 | 1078 | 1065 | 1078 | 493 | 492 | 99.7972 | |
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | het | 34.9037 | 21.1497 | 99.8148 | 97.0413 | 1078 | 4019 | 1078 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m1_e0 | het | 83.1436 | 87.7585 | 78.9898 | 84.5440 | 1061 | 148 | 1079 | 287 | 92 | 32.0557 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.7834 | 99.1728 | 92.6180 | 69.4386 | 1079 | 9 | 1079 | 86 | 79 | 91.8605 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3218 | 94.7834 | 100.0000 | 40.0222 | 1072 | 59 | 1079 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | het | 80.6812 | 75.2060 | 87.0161 | 93.7402 | 1004 | 331 | 1079 | 161 | 24 | 14.9068 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.2515 | 91.2014 | 89.3212 | 56.4841 | 1078 | 104 | 1079 | 129 | 86 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | segdup | * | 98.5851 | 97.9148 | 99.2647 | 92.9825 | 1080 | 23 | 1080 | 8 | 3 | 37.5000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2919 | 94.3909 | 98.2712 | 79.8126 | 1077 | 64 | 1080 | 19 | 17 | 89.4737 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.9456 | 99.0809 | 98.8106 | 83.8505 | 1078 | 10 | 1080 | 13 | 3 | 23.0769 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3151 | 99.0809 | 97.5610 | 86.3283 | 1078 | 10 | 1080 | 27 | 4 | 14.8148 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | het | 34.0104 | 20.5167 | 99.3560 | 98.5506 | 1080 | 4184 | 1080 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 65.4441 | 60.5202 | 71.2401 | 29.6193 | 1047 | 683 | 1080 | 436 | 388 | 88.9908 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.8710 | 72.2706 | 99.9075 | 34.6038 | 1079 | 414 | 1080 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.1168 | 99.0593 | 99.1743 | 78.7979 | 1053 | 10 | 1081 | 9 | 4 | 44.4444 | |