PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66201-66250 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2725 | 91.6923 | 99.1437 | 39.7362 | 894 | 81 | 1042 | 9 | 9 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_siren | homalt | 92.1020 | 89.3836 | 94.9909 | 79.6667 | 1044 | 124 | 1043 | 55 | 46 | 83.6364 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.3282 | 91.7949 | 99.1445 | 40.6321 | 895 | 80 | 1043 | 9 | 9 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 84.1610 | 92.6630 | 77.0880 | 87.8937 | 1023 | 81 | 1043 | 310 | 101 | 32.5806 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | * | 79.9475 | 72.5710 | 88.9932 | 94.5783 | 971 | 367 | 1043 | 129 | 20 | 15.5039 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7326 | 95.8640 | 87.9427 | 88.9869 | 1043 | 45 | 1043 | 143 | 27 | 18.8811 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | * | 98.7667 | 98.2059 | 99.3340 | 95.0336 | 1040 | 19 | 1044 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | * | 76.5914 | 63.4206 | 96.6667 | 72.4490 | 1042 | 601 | 1044 | 36 | 23 | 63.8889 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.3080 | 97.8404 | 94.8229 | 62.8918 | 1042 | 23 | 1044 | 57 | 53 | 92.9825 | |
| ciseli-custom | INDEL | D1_5 | map_siren | homalt | 86.4005 | 89.6404 | 83.3866 | 80.5952 | 1047 | 121 | 1044 | 208 | 167 | 80.2885 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.7582 | 92.5128 | 99.2395 | 38.0448 | 902 | 73 | 1044 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5235 | 99.4286 | 99.6187 | 61.7293 | 1044 | 6 | 1045 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.4946 | 92.1026 | 99.1461 | 40.7199 | 898 | 77 | 1045 | 9 | 9 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 96.1525 | 97.2426 | 95.0864 | 84.7784 | 1058 | 30 | 1045 | 54 | 6 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5712 | 99.5238 | 99.6187 | 62.3069 | 1045 | 5 | 1045 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | * | 99.3368 | 99.1501 | 99.5243 | 94.3140 | 1050 | 9 | 1046 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6188 | 99.5238 | 99.7140 | 62.1846 | 1045 | 5 | 1046 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | * | 98.8658 | 98.7724 | 98.9593 | 94.1605 | 1046 | 13 | 1046 | 11 | 7 | 63.6364 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.2924 | 84.6591 | 90.0947 | 59.0476 | 1043 | 189 | 1046 | 115 | 86 | 74.7826 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | * | 99.1958 | 99.4334 | 98.9593 | 93.1346 | 1053 | 6 | 1046 | 11 | 3 | 27.2727 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2133 | 98.1185 | 98.3083 | 78.2190 | 1043 | 20 | 1046 | 18 | 9 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | * | 98.8191 | 98.7724 | 98.8658 | 94.3109 | 1046 | 13 | 1046 | 12 | 6 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | * | 98.8177 | 98.5836 | 99.0530 | 94.2377 | 1044 | 15 | 1046 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8202 | 98.3099 | 99.3359 | 67.6190 | 1047 | 18 | 1047 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4756 | 99.2381 | 99.7143 | 61.1399 | 1042 | 8 | 1047 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | het | 3.9257 | 2.0603 | 41.4818 | 51.0283 | 56 | 2662 | 1047 | 1477 | 850 | 57.5491 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6666 | 99.6190 | 99.7143 | 62.5668 | 1046 | 4 | 1047 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.8795 | 96.2316 | 82.5710 | 64.1403 | 1047 | 41 | 1047 | 221 | 97 | 43.8914 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.2350 | 95.0135 | 97.4884 | 66.2374 | 705 | 37 | 1048 | 27 | 19 | 70.3704 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 86.1668 | 94.2029 | 79.3939 | 87.5000 | 1040 | 64 | 1048 | 272 | 43 | 15.8088 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | * | 90.5689 | 94.8193 | 86.6832 | 88.0250 | 787 | 43 | 1048 | 161 | 65 | 40.3727 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | homalt | 91.5364 | 85.9143 | 97.9458 | 60.0075 | 1043 | 171 | 1049 | 22 | 17 | 77.2727 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e1 | het | 68.8772 | 53.3842 | 97.0398 | 97.2338 | 1049 | 916 | 1049 | 32 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | segdup | * | 99.0079 | 98.8669 | 99.1493 | 95.7156 | 1047 | 12 | 1049 | 9 | 2 | 22.2222 | |
| jlack-gatk | INDEL | I1_5 | segdup | * | 95.3193 | 98.8669 | 92.0175 | 95.4565 | 1047 | 12 | 1049 | 91 | 3 | 3.2967 | |
| raldana-dualsentieon | INDEL | I1_5 | segdup | * | 99.1492 | 98.9613 | 99.3377 | 93.8436 | 1048 | 11 | 1050 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | I1_5 | segdup | * | 99.3377 | 99.1501 | 99.5261 | 94.0200 | 1050 | 9 | 1050 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0560 | 98.6830 | 99.4318 | 77.2512 | 1049 | 14 | 1050 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.7282 | 78.5285 | 58.0110 | 55.6155 | 1046 | 286 | 1050 | 760 | 754 | 99.2105 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | * | 96.0650 | 98.9613 | 93.3333 | 95.5900 | 1048 | 11 | 1050 | 75 | 3 | 4.0000 | |
| ckim-dragen | INDEL | I1_5 | segdup | * | 97.2226 | 99.2446 | 95.2813 | 95.0536 | 1051 | 8 | 1050 | 52 | 5 | 9.6154 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | * | 85.4353 | 75.2688 | 98.7770 | 84.4363 | 1050 | 345 | 1050 | 13 | 5 | 38.4615 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3607 | 98.5915 | 98.1308 | 64.2380 | 1050 | 15 | 1050 | 20 | 14 | 70.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | * | 95.8482 | 96.5993 | 95.1087 | 86.1498 | 1051 | 37 | 1050 | 54 | 9 | 16.6667 | |
| astatham-gatk | INDEL | I1_5 | segdup | * | 99.1033 | 99.0557 | 99.1509 | 94.5434 | 1049 | 10 | 1051 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | INDEL | I1_5 | segdup | * | 99.1501 | 99.0557 | 99.2446 | 94.4523 | 1049 | 10 | 1051 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | * | 99.1501 | 99.0557 | 99.2446 | 94.2109 | 1049 | 10 | 1051 | 8 | 2 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 87.3389 | 97.3404 | 79.2012 | 38.5364 | 183 | 5 | 1051 | 276 | 265 | 96.0145 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4816 | 99.3427 | 99.6209 | 60.8825 | 1058 | 7 | 1051 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | segdup | * | 97.9371 | 97.9226 | 97.9516 | 94.4656 | 1037 | 22 | 1052 | 22 | 8 | 36.3636 | |