PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65651-65700 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 78.8405 | 65.4387 | 99.1453 | 42.4354 | 977 | 516 | 928 | 8 | 7 | 87.5000 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | homalt | 99.3044 | 99.0395 | 99.5708 | 85.4375 | 928 | 9 | 928 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | homalt | 99.2513 | 99.0395 | 99.4641 | 86.2166 | 928 | 9 | 928 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6052 | 70.6331 | 99.4641 | 48.4530 | 926 | 385 | 928 | 5 | 4 | 80.0000 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | homalt | 98.6709 | 98.0973 | 99.2513 | 87.3083 | 928 | 18 | 928 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.3002 | 90.5190 | 98.4110 | 62.1036 | 907 | 95 | 929 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.8342 | 75.6494 | 91.5271 | 45.0163 | 932 | 300 | 929 | 86 | 62 | 72.0930 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.4647 | 99.1462 | 99.7852 | 87.5551 | 929 | 8 | 929 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m2_e1 | homalt | 98.9350 | 98.2030 | 99.6781 | 89.3193 | 929 | 17 | 929 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5861 | 95.4119 | 97.7895 | 64.6446 | 915 | 44 | 929 | 21 | 20 | 95.2381 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1418 | 99.5624 | 98.7248 | 70.1554 | 910 | 4 | 929 | 12 | 1 | 8.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.3087 | 97.3822 | 99.2529 | 77.8277 | 930 | 25 | 930 | 7 | 5 | 71.4286 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | homalt | 99.1471 | 99.2529 | 99.0415 | 84.5432 | 930 | 7 | 930 | 9 | 7 | 77.7778 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | het | 69.1293 | 65.6960 | 72.9412 | 91.6361 | 925 | 483 | 930 | 345 | 205 | 59.4203 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | homalt | 98.9362 | 98.3087 | 99.5717 | 86.7386 | 930 | 16 | 930 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.9329 | 99.6718 | 98.2049 | 68.8794 | 911 | 3 | 930 | 17 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9703 | 74.2812 | 99.2529 | 37.7409 | 930 | 322 | 930 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 47.0662 | 51.8141 | 43.1154 | 95.1823 | 914 | 850 | 930 | 1227 | 69 | 5.6235 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8310 | 97.7918 | 99.8926 | 85.6659 | 930 | 21 | 930 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6891 | 96.9760 | 98.4127 | 66.3940 | 930 | 29 | 930 | 15 | 13 | 86.6667 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | homalt | 99.4658 | 99.3597 | 99.5722 | 85.2640 | 931 | 6 | 931 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | homalt | 99.6788 | 99.3597 | 100.0000 | 85.3155 | 931 | 6 | 931 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | homalt | 77.0808 | 73.9096 | 80.5363 | 81.0585 | 932 | 329 | 931 | 225 | 197 | 87.5556 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.8956 | 97.3822 | 98.4144 | 74.9934 | 930 | 25 | 931 | 15 | 13 | 86.6667 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.8252 | 96.8237 | 91.0068 | 91.2594 | 884 | 29 | 931 | 92 | 19 | 20.6522 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 34.0836 | 24.4547 | 56.2198 | 65.7568 | 953 | 2944 | 931 | 725 | 695 | 95.8621 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9002 | 95.4637 | 88.5932 | 82.0967 | 947 | 45 | 932 | 120 | 15 | 12.5000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4161 | 97.1846 | 99.6791 | 68.7813 | 932 | 27 | 932 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | homalt | 99.6791 | 99.4664 | 99.8928 | 87.0650 | 932 | 5 | 932 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | * | 86.9569 | 95.6298 | 79.7263 | 90.1392 | 744 | 34 | 932 | 237 | 56 | 23.6287 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.1863 | 26.6694 | 37.5453 | 73.7371 | 643 | 1768 | 933 | 1552 | 633 | 40.7861 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | homalt | 99.6815 | 99.5772 | 99.7861 | 89.7714 | 942 | 4 | 933 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.6299 | 72.3065 | 88.6040 | 54.8263 | 953 | 365 | 933 | 120 | 112 | 93.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3658 | 97.2888 | 99.4670 | 68.3001 | 933 | 26 | 933 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | hetalt | 92.5754 | 89.1412 | 96.2848 | 45.0369 | 903 | 110 | 933 | 36 | 35 | 97.2222 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.9130 | 98.1582 | 99.6795 | 48.5714 | 906 | 17 | 933 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8871 | 98.1073 | 99.6795 | 84.5007 | 933 | 18 | 933 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | homalt | 99.3610 | 99.5731 | 99.1498 | 88.0265 | 933 | 4 | 933 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0981 | 98.2124 | 100.0000 | 84.5390 | 934 | 17 | 934 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l250_m2_e0 | homalt | 99.4146 | 99.6798 | 99.1507 | 88.1241 | 934 | 3 | 934 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | homalt | 99.4146 | 99.6798 | 99.1507 | 88.0623 | 934 | 3 | 934 | 8 | 4 | 50.0000 | |
| mlin-fermikit | INDEL | * | segdup | homalt | 97.4948 | 97.2917 | 97.6987 | 92.4653 | 934 | 26 | 934 | 22 | 21 | 95.4545 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 68.1961 | 80.6452 | 59.0765 | 60.9919 | 950 | 228 | 934 | 647 | 601 | 92.8903 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | hetalt | 93.3550 | 91.2142 | 95.5988 | 55.5303 | 924 | 89 | 934 | 43 | 43 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | homalt | 84.3192 | 79.7263 | 89.4737 | 58.7771 | 932 | 237 | 935 | 110 | 93 | 84.5455 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | * | 80.0171 | 67.0251 | 99.2569 | 92.4026 | 935 | 460 | 935 | 7 | 2 | 28.5714 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.5047 | 97.6139 | 97.3958 | 75.5476 | 900 | 22 | 935 | 25 | 7 | 28.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6301 | 97.6017 | 99.6805 | 67.8645 | 936 | 23 | 936 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6301 | 97.6017 | 99.6805 | 67.8425 | 936 | 23 | 936 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | HG002complexvar | homalt | 83.9832 | 79.7263 | 88.7204 | 58.7246 | 932 | 237 | 936 | 119 | 92 | 77.3109 | |