PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65501-65550 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2885 | 99.3428 | 99.2341 | 89.3299 | 907 | 6 | 907 | 7 | 6 | 85.7143 | |
| anovak-vg | INDEL | * | segdup | homalt | 76.7205 | 93.1250 | 65.2299 | 92.3073 | 894 | 66 | 908 | 484 | 445 | 91.9421 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | het | 97.8929 | 97.8355 | 97.9504 | 89.0296 | 904 | 20 | 908 | 19 | 3 | 15.7895 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.3708 | 77.0533 | 93.2238 | 41.8507 | 910 | 271 | 908 | 66 | 66 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2892 | 99.4524 | 99.1266 | 89.6532 | 908 | 5 | 908 | 8 | 7 | 87.5000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4524 | 99.5614 | 99.3435 | 66.3352 | 908 | 4 | 908 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 77.5741 | 66.9623 | 92.1827 | 77.2517 | 906 | 447 | 908 | 77 | 24 | 31.1688 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.2695 | 94.2516 | 72.9904 | 73.0327 | 869 | 53 | 908 | 336 | 30 | 8.9286 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | het | 80.3728 | 67.9401 | 98.3749 | 89.2349 | 907 | 428 | 908 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | segdup | homalt | 97.0085 | 94.5833 | 99.5614 | 90.4632 | 908 | 52 | 908 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | het | 94.0611 | 95.9161 | 92.2764 | 90.5184 | 869 | 37 | 908 | 76 | 12 | 15.7895 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6869 | 99.5614 | 95.8817 | 72.8731 | 908 | 4 | 908 | 39 | 38 | 97.4359 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.0137 | 96.8220 | 99.2350 | 34.3144 | 914 | 30 | 908 | 7 | 7 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2358 | 99.4530 | 99.0196 | 68.7861 | 909 | 5 | 909 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7257 | 99.6711 | 99.7805 | 65.7905 | 909 | 3 | 909 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6711 | 99.6711 | 99.6711 | 66.8845 | 909 | 3 | 909 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1817 | 98.5900 | 99.7805 | 76.0326 | 909 | 13 | 909 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m0_e0 | het | 97.5322 | 97.3233 | 97.7419 | 92.5223 | 909 | 25 | 909 | 21 | 11 | 52.3810 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6711 | 99.4530 | 99.8901 | 68.0141 | 909 | 5 | 909 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | het | 97.7901 | 97.9437 | 97.6369 | 91.8626 | 905 | 19 | 909 | 22 | 3 | 13.6364 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | * | 69.6954 | 66.4234 | 73.3065 | 95.3499 | 910 | 460 | 909 | 331 | 59 | 17.8248 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | homalt | 98.0054 | 96.0888 | 100.0000 | 85.4327 | 909 | 37 | 909 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 65.6349 | 65.9236 | 65.3487 | 72.3679 | 828 | 428 | 909 | 482 | 71 | 14.7303 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | het | 96.7570 | 97.4304 | 96.0929 | 92.6538 | 910 | 24 | 910 | 37 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6714 | 99.7807 | 99.5624 | 68.6019 | 910 | 2 | 910 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | homalt | 98.3252 | 97.1185 | 99.5624 | 88.0052 | 910 | 27 | 910 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | het | 94.5416 | 98.0519 | 91.2738 | 94.1930 | 906 | 18 | 910 | 87 | 6 | 6.8966 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4536 | 99.7807 | 99.1285 | 70.2141 | 910 | 2 | 910 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1120 | 99.2341 | 97.0149 | 76.5207 | 907 | 7 | 910 | 28 | 1 | 3.5714 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | het | 89.4513 | 85.6369 | 93.6214 | 62.1643 | 948 | 159 | 910 | 62 | 44 | 70.9677 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.4524 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4536 | 99.5624 | 99.3450 | 70.1434 | 910 | 4 | 910 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1285 | 99.7807 | 98.4848 | 70.2320 | 910 | 2 | 910 | 14 | 11 | 78.5714 | |
| jlack-gatk | INDEL | * | map_l150_m2_e1 | het | 91.3160 | 98.0519 | 85.4460 | 93.5089 | 906 | 18 | 910 | 155 | 6 | 3.8710 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.3976 | 99.2333 | 99.5624 | 89.0421 | 906 | 7 | 910 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.5939 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2366 | 99.7807 | 98.6985 | 70.3346 | 910 | 2 | 910 | 12 | 9 | 75.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.5939 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9784 | 94.5248 | 99.5628 | 57.7562 | 915 | 53 | 911 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6113 | 96.0375 | 99.2375 | 61.0025 | 921 | 38 | 911 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2916 | 98.8069 | 99.7809 | 75.8402 | 911 | 11 | 911 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3457 | 98.8069 | 99.8904 | 75.6735 | 911 | 11 | 911 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 51.3821 | 35.1740 | 95.2929 | 41.6005 | 930 | 1714 | 911 | 45 | 35 | 77.7778 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e1 | homalt | 97.8518 | 96.3002 | 99.4541 | 89.6696 | 911 | 35 | 911 | 5 | 1 | 20.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.8264 | 99.4530 | 88.8023 | 79.5703 | 909 | 5 | 912 | 115 | 1 | 0.8696 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.6925 | 98.3731 | 97.0213 | 73.9323 | 907 | 15 | 912 | 28 | 15 | 53.5714 | |
| dgrover-gatk | SNP | ti | map_l250_m0_e0 | het | 97.5923 | 97.6445 | 97.5401 | 94.6125 | 912 | 22 | 912 | 23 | 5 | 21.7391 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | * | 79.7551 | 66.6667 | 99.2383 | 92.3930 | 912 | 456 | 912 | 7 | 2 | 28.5714 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.8107 | 95.6887 | 97.9592 | 87.0443 | 910 | 41 | 912 | 19 | 14 | 73.6842 | |