PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64951-65000 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 96.2945 | 98.3664 | 94.3080 | 90.1657 | 843 | 14 | 845 | 51 | 5 | 9.8039 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5875 | 99.1784 | 100.0000 | 85.2685 | 845 | 7 | 845 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5875 | 99.1784 | 100.0000 | 84.7445 | 845 | 7 | 845 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.1784 | 99.8818 | 84.5845 | 845 | 7 | 845 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e0 | * | 98.7150 | 98.5998 | 98.8304 | 87.2578 | 845 | 12 | 845 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.0441 | 98.5965 | 89.8936 | 70.5698 | 843 | 12 | 845 | 95 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 41.1383 | 38.1818 | 44.5910 | 44.9927 | 504 | 816 | 845 | 1050 | 781 | 74.3810 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4703 | 99.1784 | 99.7639 | 83.7209 | 845 | 7 | 845 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1974 | 97.7984 | 98.5998 | 82.9317 | 844 | 19 | 845 | 12 | 3 | 25.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.3535 | 98.2625 | 96.4612 | 82.0271 | 509 | 9 | 845 | 31 | 28 | 90.3226 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.1784 | 99.8818 | 84.7237 | 845 | 7 | 845 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | het | 97.5150 | 98.3626 | 96.6819 | 90.6743 | 841 | 14 | 845 | 29 | 4 | 13.7931 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4703 | 99.1784 | 99.7639 | 84.6391 | 845 | 7 | 845 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2366 | 98.8304 | 99.6462 | 50.2931 | 845 | 10 | 845 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8304 | 98.5998 | 99.0621 | 86.7258 | 845 | 12 | 845 | 8 | 1 | 12.5000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5765 | 99.1813 | 96.0227 | 68.9046 | 848 | 7 | 845 | 35 | 2 | 5.7143 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.1784 | 99.8818 | 84.5845 | 845 | 7 | 845 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1784 | 98.8304 | 99.5289 | 53.9837 | 845 | 10 | 845 | 4 | 0 | 0.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2958 | 99.4125 | 99.1794 | 88.4605 | 846 | 5 | 846 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | * | 95.5436 | 96.1451 | 94.9495 | 90.2750 | 848 | 34 | 846 | 45 | 8 | 17.7778 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 42.6441 | 858 | 0 | 846 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m1_e0 | het | 93.9968 | 98.4795 | 89.9044 | 93.5685 | 842 | 13 | 846 | 95 | 6 | 6.3158 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | het | 88.6308 | 98.5965 | 80.4948 | 92.7959 | 843 | 12 | 846 | 205 | 44 | 21.4634 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 28.4364 | 92.2444 | 16.8091 | 77.5112 | 785 | 66 | 846 | 4187 | 78 | 1.8629 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | hetalt | 76.8495 | 65.2926 | 93.3775 | 40.5512 | 5322 | 2829 | 846 | 60 | 59 | 98.3333 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7054 | 99.5294 | 99.8819 | 48.3851 | 846 | 4 | 846 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.7194 | 61.1022 | 99.5294 | 32.2169 | 765 | 487 | 846 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | het | 97.0657 | 97.5610 | 96.5753 | 68.6359 | 1080 | 27 | 846 | 30 | 18 | 60.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1213 | 99.5294 | 98.7165 | 50.0292 | 846 | 4 | 846 | 11 | 10 | 90.9091 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6014 | 99.4125 | 97.8035 | 88.8214 | 846 | 5 | 846 | 19 | 8 | 42.1053 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7054 | 99.5294 | 99.8819 | 48.1640 | 846 | 4 | 846 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2958 | 98.9474 | 99.6466 | 51.0098 | 846 | 9 | 846 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | homalt | 79.2387 | 69.4399 | 92.2574 | 47.0554 | 843 | 371 | 846 | 71 | 37 | 52.1127 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2958 | 99.4125 | 99.1794 | 88.4605 | 846 | 5 | 846 | 7 | 6 | 85.7143 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7853 | 97.1074 | 96.4652 | 83.3460 | 940 | 28 | 846 | 31 | 21 | 67.7419 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5294 | 99.2958 | 99.7642 | 84.2672 | 846 | 6 | 846 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0857 | 97.9143 | 98.2578 | 84.7960 | 845 | 18 | 846 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7642 | 99.5294 | 100.0000 | 48.4461 | 846 | 4 | 846 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.2958 | 98.8318 | 99.7642 | 85.6708 | 846 | 10 | 846 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 95.5921 | 97.9143 | 93.3775 | 89.4196 | 845 | 18 | 846 | 60 | 5 | 8.3333 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.6732 | 97.8316 | 99.5294 | 30.3849 | 767 | 17 | 846 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0870 | 98.0301 | 98.1439 | 83.8969 | 846 | 17 | 846 | 16 | 5 | 31.2500 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | * | 58.1587 | 59.3567 | 57.0081 | 84.8215 | 812 | 556 | 846 | 638 | 455 | 71.3166 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7299 | 97.1074 | 96.3554 | 83.0174 | 940 | 28 | 846 | 32 | 22 | 68.7500 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.4131 | 99.5300 | 99.2966 | 88.5687 | 847 | 4 | 847 | 6 | 6 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | het | 98.4311 | 98.3740 | 98.4884 | 69.6006 | 1089 | 18 | 847 | 13 | 2 | 15.3846 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.0060 | 92.0824 | 66.1719 | 76.4316 | 849 | 73 | 847 | 433 | 45 | 10.3926 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 80.5755 | 83.5821 | 77.7778 | 62.2922 | 840 | 165 | 847 | 242 | 95 | 39.2562 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8315 | 98.5998 | 99.0643 | 85.4245 | 845 | 12 | 847 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5343 | 99.1889 | 99.8821 | 57.8109 | 856 | 7 | 847 | 1 | 1 | 100.0000 | |