PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64901-64950 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.5344 | 98.2456 | 98.8249 | 66.8743 | 840 | 15 | 841 | 10 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.4218 | 99.0610 | 97.7907 | 85.5292 | 844 | 8 | 841 | 19 | 14 | 73.6842 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.9652 | 96.8966 | 99.0577 | 82.2719 | 843 | 27 | 841 | 8 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | * | 96.3932 | 96.8966 | 95.8951 | 88.3455 | 843 | 27 | 841 | 36 | 7 | 19.4444 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | homalt | 98.8830 | 98.2477 | 99.5266 | 85.6901 | 841 | 15 | 841 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | het | 97.6722 | 97.8947 | 97.4508 | 91.3510 | 837 | 18 | 841 | 22 | 3 | 13.6364 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 76.9744 | 72.4287 | 82.1289 | 90.9356 | 838 | 319 | 841 | 183 | 83 | 45.3552 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4104 | 99.5294 | 99.2916 | 44.4954 | 846 | 4 | 841 | 6 | 6 | 100.0000 | |
| ciseli-custom | INDEL | * | segdup | homalt | 85.4420 | 87.9167 | 83.1028 | 93.1884 | 844 | 116 | 841 | 171 | 150 | 87.7193 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.4753 | 97.8996 | 99.0577 | 86.5940 | 839 | 18 | 841 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9423 | 99.0599 | 98.8249 | 87.6792 | 843 | 8 | 841 | 10 | 8 | 80.0000 | |
| jlack-gatk | INDEL | * | map_l150_m1_e0 | het | 91.0230 | 98.0117 | 84.9647 | 93.0437 | 838 | 17 | 842 | 149 | 6 | 4.0269 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2339 | 98.8263 | 99.6450 | 83.3103 | 842 | 10 | 842 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2339 | 98.4795 | 100.0000 | 52.7497 | 842 | 13 | 842 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.5925 | 98.0163 | 99.1755 | 86.0408 | 840 | 17 | 842 | 7 | 2 | 28.5714 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | het | 97.9024 | 98.0117 | 97.7933 | 88.3397 | 838 | 17 | 842 | 19 | 3 | 15.7895 | |
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | het | 94.3374 | 98.0117 | 90.9287 | 93.7882 | 838 | 17 | 842 | 84 | 6 | 7.1429 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | homalt | 99.6477 | 99.5327 | 99.7630 | 89.0347 | 852 | 4 | 842 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.5466 | 97.8873 | 89.5745 | 84.0136 | 834 | 18 | 842 | 98 | 1 | 1.0204 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m0_e0 | * | 97.7365 | 97.5666 | 97.9070 | 84.8485 | 842 | 21 | 842 | 18 | 4 | 22.2222 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2552 | 98.0301 | 98.4813 | 60.8417 | 846 | 17 | 843 | 13 | 10 | 76.9231 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.2389 | 96.7975 | 95.6867 | 83.0087 | 937 | 31 | 843 | 38 | 30 | 78.9474 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e0 | het | 92.3836 | 93.0464 | 91.7301 | 91.9202 | 843 | 63 | 843 | 76 | 49 | 64.4737 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1765 | 99.0599 | 99.2933 | 88.5872 | 843 | 8 | 843 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2552 | 98.0301 | 98.4813 | 61.4241 | 846 | 17 | 843 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | homalt | 92.3976 | 87.0219 | 98.4813 | 80.4522 | 637 | 95 | 843 | 13 | 11 | 84.6154 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4690 | 98.9437 | 100.0000 | 83.2738 | 843 | 9 | 843 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2860 | 97.0041 | 97.5694 | 83.2558 | 939 | 29 | 843 | 21 | 16 | 76.1905 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2348 | 98.9437 | 99.5277 | 84.3986 | 843 | 9 | 843 | 4 | 4 | 100.0000 | |
| ckim-gatk | SNP | * | HG002compoundhet | hetalt | 98.8856 | 97.7958 | 100.0000 | 22.8728 | 843 | 19 | 843 | 0 | 0 | ||
| ckim-gatk | SNP | tv | HG002compoundhet | hetalt | 98.8856 | 97.7958 | 100.0000 | 22.8728 | 843 | 19 | 843 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | * | 48.2541 | 31.8474 | 99.5277 | 97.7346 | 843 | 1804 | 843 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 80.9161 | 72.4451 | 91.6304 | 55.0342 | 957 | 364 | 843 | 77 | 76 | 98.7013 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.1550 | 88.6524 | 98.1395 | 56.7404 | 6039 | 773 | 844 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | * | 96.5071 | 95.4649 | 97.5723 | 88.6736 | 842 | 40 | 844 | 21 | 5 | 23.8095 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0270 | 60.6987 | 91.6395 | 81.0025 | 834 | 540 | 844 | 77 | 2 | 2.5974 | |
| jmaeng-gatk | SNP | * | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6558 | 99.1774 | 98.1395 | 88.0655 | 844 | 7 | 844 | 16 | 6 | 37.5000 | |
| jmaeng-gatk | SNP | tv | HG002compoundhet | hetalt | 98.9449 | 97.9118 | 100.0000 | 22.9224 | 844 | 18 | 844 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 53.9967 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 54.0717 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.2885 | 83.6842 | 79.0262 | 67.0065 | 1113 | 217 | 844 | 224 | 167 | 74.5536 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.6549 | 98.5965 | 98.7135 | 57.7151 | 843 | 12 | 844 | 11 | 3 | 27.2727 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 94.7339 | 90.5742 | 99.2941 | 29.5191 | 836 | 87 | 844 | 6 | 5 | 83.3333 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.8400 | 87.9187 | 96.1276 | 66.5396 | 735 | 101 | 844 | 34 | 30 | 88.2353 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1239 | 97.7673 | 98.4831 | 88.4750 | 832 | 19 | 844 | 13 | 7 | 53.8462 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 51.8223 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8869 | 98.7135 | 99.0610 | 53.7961 | 844 | 11 | 844 | 8 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5283 | 99.0610 | 100.0000 | 84.2066 | 844 | 8 | 844 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | het | 97.3465 | 98.3626 | 96.3512 | 90.4715 | 841 | 14 | 845 | 32 | 3 | 9.3750 | |