PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64501-64550 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 87.0813 | 77.1186 | 100.0000 | 34.4884 | 728 | 216 | 794 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6920 | 97.4178 | 100.0000 | 77.5262 | 830 | 22 | 794 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.2767 | 87.0680 | 98.1481 | 43.3170 | 781 | 116 | 795 | 15 | 13 | 86.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 79.5482 | 67.3279 | 97.1883 | 91.0248 | 577 | 280 | 795 | 23 | 11 | 47.8261 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.3710 | 98.3627 | 80.2220 | 89.1848 | 781 | 13 | 795 | 196 | 29 | 14.7959 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 75.0708 | 63.2962 | 92.2274 | 85.6453 | 795 | 461 | 795 | 67 | 11 | 16.4179 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 29.7781 | 20.5030 | 54.3776 | 66.9455 | 799 | 3098 | 795 | 667 | 654 | 98.0510 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 85.9498 | 90.2468 | 82.0433 | 90.3390 | 768 | 83 | 795 | 174 | 11 | 6.3218 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 80.8243 | 69.1149 | 97.3105 | 42.5158 | 1882 | 841 | 796 | 22 | 22 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | homalt | 30.1116 | 17.7243 | 100.0000 | 92.1453 | 796 | 3695 | 796 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8280 | 87.1851 | 99.2519 | 87.9706 | 796 | 117 | 796 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.8398 | 91.3242 | 98.6369 | 70.6759 | 800 | 76 | 796 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.4282 | 87.3673 | 76.2452 | 66.4309 | 823 | 119 | 796 | 248 | 247 | 99.5968 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.1377 | 91.6667 | 98.8820 | 71.9708 | 803 | 73 | 796 | 9 | 9 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5400 | 96.5952 | 96.4848 | 85.2941 | 766 | 27 | 796 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 96.8476 | 96.5060 | 97.1917 | 84.9670 | 801 | 29 | 796 | 23 | 6 | 26.0870 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.3783 | 98.5270 | 96.2560 | 85.4148 | 602 | 9 | 797 | 31 | 25 | 80.6452 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 48.4627 | 89.8402 | 33.1807 | 64.3673 | 787 | 89 | 797 | 1605 | 1594 | 99.3146 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | homalt | 95.8509 | 93.1075 | 98.7608 | 93.4160 | 797 | 59 | 797 | 10 | 5 | 50.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | het | 43.5638 | 28.0338 | 97.6716 | 69.5976 | 797 | 2046 | 797 | 19 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | het | 98.5167 | 98.3951 | 98.6386 | 85.2231 | 797 | 13 | 797 | 11 | 1 | 9.0909 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5832 | 87.5139 | 98.2759 | 42.2886 | 785 | 112 | 798 | 14 | 12 | 85.7143 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 65.6044 | 51.5250 | 90.2715 | 87.2106 | 794 | 747 | 798 | 86 | 3 | 3.4884 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0398 | 97.0909 | 99.0074 | 61.6738 | 801 | 24 | 798 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0398 | 97.0909 | 99.0074 | 61.6738 | 801 | 24 | 798 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | homalt | 96.5675 | 93.6916 | 99.6255 | 87.3500 | 802 | 54 | 798 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | segdup | homalt | 87.9737 | 80.1042 | 97.5580 | 91.2900 | 769 | 191 | 799 | 20 | 20 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | homalt | 77.3850 | 63.3624 | 99.3781 | 77.0744 | 799 | 462 | 799 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | * | 96.6727 | 96.2651 | 97.0838 | 86.5742 | 799 | 31 | 799 | 24 | 6 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.7593 | 98.1481 | 99.3781 | 83.5851 | 795 | 15 | 799 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 95.5127 | 98.1481 | 93.0151 | 89.6916 | 795 | 15 | 799 | 60 | 4 | 6.6667 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9324 | 97.8873 | 100.0000 | 78.7726 | 834 | 18 | 799 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 96.9616 | 98.1481 | 95.8034 | 90.3939 | 795 | 15 | 799 | 35 | 1 | 2.8571 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 53.6602 | 38.0295 | 91.1060 | 74.8783 | 799 | 1302 | 799 | 78 | 48 | 61.5385 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | homalt | 76.7754 | 62.4512 | 99.6264 | 88.8843 | 800 | 481 | 800 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | * | 97.6843 | 96.6265 | 98.7654 | 85.1240 | 802 | 28 | 800 | 10 | 2 | 20.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6187 | 98.4724 | 98.7654 | 85.1838 | 838 | 13 | 800 | 10 | 1 | 10.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | * | 94.1730 | 91.9540 | 96.5018 | 87.3047 | 800 | 70 | 800 | 29 | 21 | 72.4138 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 99.1307 | 98.5185 | 99.7506 | 83.4469 | 798 | 12 | 800 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.5786 | 98.2716 | 98.8875 | 85.8813 | 796 | 14 | 800 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8613 | 87.6232 | 98.7654 | 88.2880 | 800 | 113 | 800 | 10 | 3 | 30.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 97.2049 | 98.3951 | 96.0432 | 90.0501 | 797 | 13 | 801 | 33 | 1 | 3.0303 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.7251 | 83.8065 | 98.8889 | 77.1767 | 797 | 154 | 801 | 9 | 7 | 77.7778 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 98.7630 | 98.3951 | 99.1337 | 86.3950 | 797 | 13 | 801 | 7 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | * | 97.3838 | 96.3855 | 98.4029 | 90.0233 | 800 | 30 | 801 | 13 | 2 | 15.3846 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e1 | het | 98.6414 | 98.3951 | 98.8889 | 85.5098 | 797 | 13 | 801 | 9 | 0 | 0.0000 | |