PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64451-64500 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 65.2028 | 60.0760 | 71.2862 | 53.7688 | 790 | 525 | 787 | 317 | 306 | 96.5300 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.6834 | 100.0000 | 97.4010 | 66.6941 | 786 | 0 | 787 | 21 | 18 | 85.7143 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 86.8238 | 79.0267 | 96.3280 | 91.0593 | 682 | 181 | 787 | 30 | 23 | 76.6667 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4981 | 99.1184 | 97.8856 | 89.2499 | 787 | 7 | 787 | 17 | 11 | 64.7059 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2020 | 91.9487 | 96.5686 | 87.1557 | 788 | 69 | 788 | 28 | 21 | 75.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.6230 | 99.8728 | 97.4042 | 72.7150 | 785 | 1 | 788 | 21 | 13 | 61.9048 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 76.7370 | 72.2426 | 81.8276 | 90.5347 | 786 | 302 | 788 | 175 | 79 | 45.1429 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2068 | 83.8350 | 100.0000 | 41.5864 | 752 | 145 | 788 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4322 | 99.2443 | 99.6207 | 88.9340 | 788 | 6 | 788 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4998 | 99.8728 | 97.1640 | 70.8797 | 785 | 1 | 788 | 23 | 13 | 56.5217 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 54.6319 | 51.6463 | 57.9838 | 83.3700 | 549 | 514 | 788 | 571 | 15 | 2.6270 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 89.8936 | 85.5422 | 94.7115 | 86.1932 | 781 | 132 | 788 | 44 | 4 | 9.0909 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3069 | 99.2443 | 99.3695 | 89.2982 | 788 | 6 | 788 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | * | map_l150_m0_e0 | homalt | 32.3149 | 19.2712 | 100.0000 | 93.7742 | 788 | 3301 | 788 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | * | 71.6038 | 55.9659 | 99.3695 | 96.1005 | 788 | 620 | 788 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.1566 | 82.3347 | 99.6207 | 65.0618 | 797 | 171 | 788 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 90.5336 | 83.5805 | 98.7484 | 42.1852 | 789 | 155 | 789 | 10 | 9 | 90.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 48.6441 | 89.1553 | 33.4464 | 63.7189 | 781 | 95 | 789 | 1570 | 1544 | 98.3439 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3703 | 99.3703 | 99.3703 | 89.2862 | 789 | 5 | 789 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | * | 65.1609 | 58.8939 | 72.9205 | 92.7722 | 788 | 550 | 789 | 293 | 182 | 62.1160 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | * | 91.5650 | 89.1156 | 94.1527 | 97.5656 | 786 | 96 | 789 | 49 | 3 | 6.1225 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4336 | 99.4962 | 99.3711 | 89.1468 | 790 | 4 | 790 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.4044 | 84.1695 | 100.0000 | 41.9118 | 755 | 142 | 790 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4336 | 99.4962 | 99.3711 | 89.5036 | 790 | 4 | 790 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | het | 98.3825 | 97.6543 | 99.1217 | 84.6554 | 791 | 19 | 790 | 7 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2859 | 84.0580 | 99.8737 | 41.1152 | 754 | 143 | 791 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 84.3168 | 83.7696 | 84.8712 | 76.9763 | 800 | 155 | 791 | 141 | 92 | 65.2482 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2201 | 83.9465 | 99.8737 | 37.5887 | 753 | 144 | 791 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3720 | 99.7481 | 98.9987 | 88.0853 | 792 | 2 | 791 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 31.9171 | 30.3578 | 33.6453 | 67.1740 | 806 | 1849 | 791 | 1560 | 1458 | 93.4615 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | het | 92.2591 | 91.5789 | 92.9495 | 86.7487 | 783 | 72 | 791 | 60 | 12 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.4322 | 96.6365 | 96.2287 | 73.8133 | 747 | 26 | 791 | 31 | 21 | 67.7419 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2201 | 83.9465 | 99.8737 | 37.5887 | 753 | 144 | 791 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.3148 | 97.1605 | 99.4969 | 84.1760 | 787 | 23 | 791 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.5234 | 86.7470 | 99.1239 | 87.6564 | 792 | 121 | 792 | 7 | 3 | 42.8571 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.1972 | 97.4074 | 99.0000 | 84.3750 | 789 | 21 | 792 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | homalt | 62.2886 | 45.2830 | 99.7481 | 85.1339 | 792 | 957 | 792 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.5107 | 95.4217 | 93.6170 | 89.0315 | 792 | 38 | 792 | 54 | 19 | 35.1852 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 33.9862 | 95.3401 | 20.6789 | 83.3507 | 757 | 37 | 792 | 3038 | 37 | 1.2179 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 72.7369 | 58.3764 | 96.4677 | 87.8568 | 791 | 564 | 792 | 29 | 21 | 72.4138 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.6667 | 84.6154 | 100.0000 | 42.4110 | 759 | 138 | 793 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9578 | 97.5323 | 98.3871 | 83.8380 | 830 | 21 | 793 | 13 | 1 | 7.6923 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | * | 97.6099 | 96.0241 | 99.2491 | 81.0529 | 797 | 33 | 793 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 63.6732 | 58.1871 | 70.3014 | 85.8912 | 796 | 572 | 793 | 335 | 286 | 85.3731 | |
| cchapple-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 99.8741 | 90.5081 | 0 | 0 | 793 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.8741 | 75.9175 | 0 | 0 | 793 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.7913 | 59.3427 | 97.5400 | 44.2387 | 632 | 433 | 793 | 20 | 13 | 65.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | het | 97.8948 | 97.4074 | 98.3871 | 82.7741 | 789 | 21 | 793 | 13 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m1_e0 | het | 92.1648 | 92.8655 | 91.4747 | 91.4533 | 794 | 61 | 794 | 74 | 48 | 64.8649 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.1726 | 72.6852 | 64.1876 | 28.7853 | 157 | 59 | 794 | 443 | 440 | 99.3228 | |