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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63501-63550 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 90.2013 | 82.6531 | 99.2669 | 29.5455 | 648 | 136 | 677 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 70.8362 | 61.8574 | 82.8641 | 49.8157 | 373 | 230 | 677 | 140 | 133 | 95.0000 | |
| ckim-dragen | INDEL | * | HG002compoundhet | homalt | 46.1333 | 99.2711 | 30.0488 | 84.8211 | 681 | 5 | 677 | 1576 | 1573 | 99.8096 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 79.4289 | 78.4553 | 80.4270 | 61.9241 | 193 | 53 | 678 | 165 | 80 | 48.4848 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | het | 98.6884 | 97.8324 | 99.5595 | 91.9044 | 677 | 15 | 678 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1967 | 95.2767 | 97.1347 | 75.0892 | 706 | 35 | 678 | 20 | 18 | 90.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.9527 | 87.7778 | 90.1596 | 65.0395 | 553 | 77 | 678 | 74 | 57 | 77.0270 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | * | 65.8380 | 50.7257 | 93.7759 | 46.3252 | 664 | 645 | 678 | 45 | 44 | 97.7778 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0946 | 96.0916 | 98.1187 | 71.9562 | 713 | 29 | 678 | 13 | 8 | 61.5385 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | homalt | 86.3667 | 98.3965 | 76.9580 | 80.9842 | 675 | 11 | 678 | 203 | 198 | 97.5369 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4411 | 97.3251 | 97.5575 | 83.6658 | 473 | 13 | 679 | 17 | 10 | 58.8235 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | homalt | 53.4856 | 42.2526 | 72.8541 | 73.1257 | 679 | 928 | 679 | 253 | 229 | 90.5138 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.9551 | 95.5466 | 98.4058 | 74.9000 | 708 | 33 | 679 | 11 | 8 | 72.7273 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | het | 69.9621 | 66.1117 | 74.2888 | 90.7085 | 675 | 346 | 679 | 235 | 131 | 55.7447 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | homalt | 94.6381 | 90.5405 | 99.1241 | 73.0527 | 469 | 49 | 679 | 6 | 3 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | het | 79.4298 | 74.1520 | 85.5164 | 95.0714 | 634 | 221 | 679 | 115 | 19 | 16.5217 | |
| ckim-vqsr | SNP | * | map_l250_m0_e0 | het | 61.5036 | 45.0863 | 96.7236 | 98.5089 | 679 | 827 | 679 | 23 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | segdup | het | 98.8393 | 98.5549 | 99.1254 | 93.5804 | 682 | 10 | 680 | 6 | 2 | 33.3333 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.7109 | 81.5789 | 94.8396 | 65.2279 | 682 | 154 | 680 | 37 | 31 | 83.7838 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | het | 71.2728 | 70.4545 | 72.1103 | 91.6230 | 651 | 273 | 680 | 263 | 75 | 28.5171 | |
| asubramanian-gatk | INDEL | * | HG002compoundhet | homalt | 56.3380 | 99.1254 | 39.3519 | 82.7957 | 680 | 6 | 680 | 1048 | 928 | 88.5496 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5975 | 87.2751 | 94.1828 | 92.0590 | 679 | 99 | 680 | 42 | 5 | 11.9048 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9521 | 75.2294 | 97.5610 | 27.3958 | 656 | 216 | 680 | 17 | 17 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.0411 | 92.8475 | 85.5346 | 72.4341 | 688 | 53 | 680 | 115 | 105 | 91.3043 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | * | 96.8582 | 94.5607 | 99.2701 | 82.3545 | 678 | 39 | 680 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 75.2854 | 64.8571 | 89.7098 | 61.7172 | 681 | 369 | 680 | 78 | 71 | 91.0256 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | homalt | 73.5533 | 99.1254 | 58.4695 | 77.3735 | 680 | 6 | 680 | 483 | 480 | 99.3789 | |
| qzeng-custom | INDEL | * | HG002compoundhet | homalt | 47.3681 | 97.3761 | 31.2960 | 66.5488 | 668 | 18 | 681 | 1495 | 1295 | 86.6221 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4994 | 91.4980 | 97.7044 | 66.4420 | 678 | 63 | 681 | 16 | 7 | 43.7500 | |
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | homalt | 96.1134 | 92.8962 | 99.5614 | 86.8865 | 680 | 52 | 681 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | het | 99.2017 | 98.8439 | 99.5620 | 92.4343 | 684 | 8 | 682 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.2832 | 58.3269 | 98.5549 | 37.2051 | 753 | 538 | 682 | 10 | 8 | 80.0000 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | homalt | 57.9932 | 99.4169 | 40.9364 | 81.2893 | 682 | 4 | 682 | 984 | 980 | 99.5935 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8005 | 98.3333 | 99.2722 | 82.8678 | 708 | 12 | 682 | 5 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | het | 66.1838 | 50.9363 | 94.4598 | 80.5181 | 680 | 655 | 682 | 40 | 17 | 42.5000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 87.8398 | 78.3163 | 100.0000 | 38.0563 | 614 | 170 | 682 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 81.0884 | 72.8543 | 91.4209 | 60.4663 | 730 | 272 | 682 | 64 | 49 | 76.5625 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 81.4625 | 93.8889 | 71.9409 | 88.0905 | 676 | 44 | 682 | 266 | 37 | 13.9098 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2746 | 95.6815 | 96.8750 | 75.2809 | 709 | 32 | 682 | 22 | 19 | 86.3636 | |
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | homalt | 95.5851 | 93.1694 | 98.1295 | 82.8225 | 682 | 50 | 682 | 13 | 4 | 30.7692 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | * | 84.1285 | 78.9965 | 89.9736 | 93.9438 | 677 | 180 | 682 | 76 | 4 | 5.2632 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 60.9836 | 60.0000 | 62.0000 | 58.6311 | 603 | 402 | 682 | 418 | 306 | 73.2057 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.6501 | 74.6171 | 72.7079 | 81.2886 | 682 | 232 | 682 | 256 | 1 | 0.3906 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.0332 | 75.5734 | 99.8536 | 26.3215 | 659 | 213 | 682 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | homalt | 95.9887 | 93.1694 | 98.9840 | 82.2879 | 682 | 50 | 682 | 7 | 4 | 57.1429 | |
| hfeng-pmm2 | INDEL | * | HG002compoundhet | homalt | 70.6370 | 99.4169 | 54.7791 | 80.4614 | 682 | 4 | 682 | 563 | 558 | 99.1119 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3732 | 96.7655 | 97.9885 | 73.3129 | 718 | 24 | 682 | 14 | 9 | 64.2857 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | homalt | 74.6579 | 99.4169 | 59.7721 | 77.4506 | 682 | 4 | 682 | 459 | 454 | 98.9107 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | * | 48.6337 | 42.4224 | 56.9758 | 58.5526 | 697 | 946 | 682 | 515 | 432 | 83.8835 | |
| mlin-fermikit | INDEL | D6_15 | HG002compoundhet | het | 44.7280 | 80.2570 | 31.0032 | 43.1484 | 687 | 169 | 683 | 1520 | 1507 | 99.1447 | |